Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2059g00006 ATGCTCCAAGGAACCTGCATTTTACTAATCTCTGTTCTGTGTTCGTTTTTACCACATGGAACACCAATGCTTAACCTCACTCTTCCCGGGCAACACCCAGATCCCGAAGCTGTTGCCCGAGAAGTTCATAGTAAGGTTAAAGCTTCAATTGCAAGAAGGGAAATGTTATCAATATCACATAAAGATGAAGTACAATCATGCCTAACAGGGAACCCAATCGACGATTGTTGGAAATGCAACACAAATTGGTTCAACAATCGACAAAGACTAGCTGATTGTGCAATTGGGTTCGGTCAGAACGCAAAGGGAGGCAAAGGCGGTGACTTTTACATCATCACGGACTCTTCAGACGATAACCCTGTGAACCCAAAACCTGGCACACTAAGATACGCAGTGATACAAAACGAGCCACTGTGGATAGTGTTCCCCACTAACATGATGATTAAGCTCTCTCAGGAACTCATCTTCAACAGCTACAAAACCATCGATGGTCGTGGCGCTGACGTTCACATTGTCGGTGGTGGCTGCATCACTCTTCAGTATATAACCAACGTCATCATCCACAATATTCACATTCACCACTGTCACCCCTCGGGTAACACTAACGTTCGCTCGAGCCCACAGCACTACGGTTTTCGAACGTTATCTGACGGCGACGGAATATCCATATTTGGCTCGAGGGACATATGGATCGACCACTGCACATTGTCACGCTGCAAGGACGGTTTAATTGATGCCGTGATGGGCTCAACGGCGATAACCGTTTCCAACAACCATTTCTCGCACCACAACGAGGTGATGCTGTTGGGACACAGCGATAACTACCTACCTGACTCGGGCATGCAGGTCACGCTCGCGTTTAACCACTTCGGCGAAAACCTGGTACAGAGGATGCCACGTTGCAGGCTGGGATACTTCCATGTGGTGAACAACGACTTCACGAGGTGGGAGATGTATGCGATTGGGGGAAGTGCGGGACCCACAATAAATAGCCAGGGGAACCGGTTCACGGCACCGGAGAATCCTTACGCGAAGGAAGTGACGAAGAGGGAAACAGGGGAATGGAGTGGGTGGAATTGGAGGTCAGAAGGAGATGTAATGGTGAATGGAGCGTTCTTCGTGGGTTCTGGGGAAAGTGGTGAGGTGAAGTACCAGAATGCGTACAGTGTTGACCCCAAATCCGCCGATCGTATCTCCGTCCTCACCATGGCCGCCGGTGTTCTCGGCGTCGCCAGGGACAATAATGTGGGTATGTGGACTAGAGGACCCAACGATGGTGGTGGTTATATTTCAGATTTTGGCCCAGAATACACGGACGATATGTCACGGAGTAAAATGCCATTGCCACCTCCACGTATTTTGACTCTTCTATTTGCTTTTGTTGCTTTCTTGTGTTTGTTGTCTCACACAACACCCTTAACAGTTGTTCTATAA 1434 0.4861 MLQGTCILLISVLCSFLPHGTPMLNLTLPGQHPDPEAVAREVHSKVKASIARREMLSISHKDEVQSCLTGNPIDDCWKCNTNWFNNRQRLADCAIGFGQNAKGGKGGDFYIITDSSDDNPVNPKPGTLRYAVIQNEPLWIVFPTNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYITNVIIHNIHIHHCHPSGNTNVRSSPQHYGFRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNEVMLLGHSDNYLPDSGMQVTLAFNHFGENLVQRMPRCRLGYFHVVNNDFTRWEMYAIGGSAGPTINSQGNRFTAPENPYAKEVTKRETGEWSGWNWRSEGDVMVNGAFFVGSGESGEVKYQNAYSVDPKSADRISVLTMAAGVLGVARDNNVGMWTRGPNDGGGYISDFGPEYTDDMSRSKMPLPPPRILTLLFAFVAFLCLLSHTTPLTVVL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2059g00006 477 SMART amb_all 145 342 IPR002022 -
Gabi2059g00006 477 Gene3D - 70 409 IPR012334 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Gabi2059g00006 477 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Gabi2059g00006 477 PANTHER PECTATE LYASE 18-RELATED 31 411 IPR045032 GO:0030570
Gabi2059g00006 477 FunFam Pectate lyase 70 409 - -
Gabi2059g00006 477 Pfam Pectate lyase 154 336 IPR002022 -
Gabi2059g00006 477 SUPERFAMILY Pectin lyase-like 61 395 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2059g00006 Gabi-Chr2059 153566 157796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2059g00006 1 476 Polysaccharide Lyase AT3G53190 67.423 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2059g00006 K01728 - gmx:100815062 810.061