Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2059g00005 ATGCAAGGAGAACATTTTCGTAAAGGGACTTGGCTTCAAGAGGAAGATGAGCAATTGACAAGCTTTGTGACCCGTCTCGGGGGTCGAAGGTGGGACTCTCTTGCCAAAGTAGCAGGCCTTAGGAGAAGTGGTAAAAGCTGCAGGTTAAGGTGGATGAACTATCTTCGTCCAAATCTCAAGCATGGCCCTTTTAGTGTTGAAGAAGAGCAACTTATTGTTCAGCTTCAGCAGCGATGTGGTAACAAGTGGTCGAAGATTGCTCGAAGGCTTCCAGGAAGAACTGATAATGAAATTAAGAACTACTGGAGAACCCATTTAAGAAAAAGAGCACAAGCTCAACAAGAAGGTAAGTTCAAGTATGAATTAGAAAACACATCACAAGATTTCAATCAGAAAAGGATTGATATGGTTTCGAAGGACTACAATCATGCAAACGTTTATTGTCAAGAAAATGAATGGGAGACTAAGGATAGCTCTATAGACACTTTTCCTTTATCAGATTGGGAATTGAGAAGCTCACTGCATGACTCTAGAATATTAGATTGGATAGCACAATTGCAAAATGGAAACAGTGAGAAAGAACAAGAACAAGAACAGGATTGTAATAGCACAGGAACGTACGAATACAATCCTCAAGAATTTGCAGAGTGCCGTGATACATGGGATTATTCAGGTTCCCTTTGGGACATGAACTAA 696 0.4066 MQGEHFRKGTWLQEEDEQLTSFVTRLGGRRWDSLAKVAGLRRSGKSCRLRWMNYLRPNLKHGPFSVEEEQLIVQLQQRCGNKWSKIARRLPGRTDNEIKNYWRTHLRKRAQAQQEGKFKYELENTSQDFNQKRIDMVSKDYNHANVYCQENEWETKDSSIDTFPLSDWELRSSLHDSRILDWIAQLQNGNSEKEQEQEQDCNSTGTYEYNPQEFAECRDTWDYSGSLWDMN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2059g00005 231 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 171 - -
Gabi2059g00005 231 Gene3D - 62 139 - -
Gabi2059g00005 231 SMART sant 60 108 IPR001005 -
Gabi2059g00005 231 SMART sant 7 57 IPR001005 -
Gabi2059g00005 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gabi2059g00005 231 CDD SANT 63 106 IPR001005 -
Gabi2059g00005 231 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Gabi2059g00005 231 FunFam Myb transcription factor 8 60 - -
Gabi2059g00005 231 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gabi2059g00005 231 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gabi2059g00005 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Gabi2059g00005 231 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Gabi2059g00005 231 CDD SANT 10 55 IPR001005 -
Gabi2059g00005 231 Gene3D - 8 60 - -
Gabi2059g00005 231 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2059g00005 Gabi-Chr2059 142854 144167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2059g00005 4 114 MYB Transcription Factor Family AT5G59780 61.261 1.15e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2059g00005 Myb_DNA-binding 8.7e-13 CL0123