Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2058g00001 ATGTCAAATAGCAGGAACACTCATTGGTGTTATACTTGCAGGAGGCCCGTTCGACTGGGAAGGCGAGGTATGGTTTGTCCTAGCTGTAATGAGGGATTTGTTCAAGAACTTGATGATATGGTGAACGTTAACCCTCAAGACATCTTTGGACTGGACCACAACAACGAACGTGACCAAAGGTTTGGACTCATGGAAACTTTCTCACCCTTTATGAGGCATCGAATGGCAGATAGAAACCATAGCCATGGTATCAGAGCACGGCCAGATTCAATTCCTGAACACAGTCCAGGTTTTGCTCCATTGTTGATCTTTGGTGGCCAAATTCCTTTCAGATTGTCAGGACATGGTGGCTTTGAAGCTCTCTTTAATGGAACTCCAGGAATCGGGATGACACGAGGTAACACAGGCGATTATTTTATCGGTCCTGGACTTGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGACCCCCACCAGCATCAAGGTCCTCTATAGATGCAATGCCTACTGTCAAGATCACACATAGGCATCTTCGTTCAGATTCACATTGTCCAATTTGCAAAGATAAATTCGAACTTGGGTCTGAAGCAAGACAAATGCCATGTAACCATGTGTATCACTCGGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCTTGCCCGGTTTGTCGTCAAGAATTGCCACCTCAAGGATTGAGTGGTGGTAACCATGGCTCAAATGGTAGAAGTAGCAGTGGCAATGGAAGGGCTAGTGGTAGAGAGAACCAGGGAAGGCGAAATCCGTTCTCATTTTTGTGGCCTTTCCGTTCTTCTAATTCTAGCAGTAGTGATGGAGCAACCGGAAGTAGCTCACCAACACCAACTATCCATGAGAATAGCCATCATACTGGGTATTCTGGGTGGCCATTTGAATGA 924 0.4535 MSNSRNTHWCYTCRRPVRLGRRGMVCPSCNEGFVQELDDMVNVNPQDIFGLDHNNERDQRFGLMETFSPFMRHRMADRNHSHGIRARPDSIPEHSPGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGMTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTVKITHRHLRSDSHCPICKDKFELGSEARQMPCNHVYHSDCIVPWLVQHNSCPVCRQELPPQGLSGGNHGSNGRSSSGNGRASGRENQGRRNPFSFLWPFRSSNSSSSDGATGSSSPTPTIHENSHHTGYSGWPFE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2058g00001 307 Pfam Ring finger domain 185 227 IPR001841 -
Gabi2058g00001 307 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Gabi2058g00001 307 MobiDBLite consensus disorder prediction 268 298 - -
Gabi2058g00001 307 MobiDBLite consensus disorder prediction 234 307 - -
Gabi2058g00001 307 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
Gabi2058g00001 307 SMART ring_2 186 226 IPR001841 -
Gabi2058g00001 307 MobiDBLite consensus disorder prediction 235 261 - -
Gabi2058g00001 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 231 - -
Gabi2058g00001 307 CDD RING-H2_RNF126-like 186 227 - -
Gabi2058g00001 307 SUPERFAMILY RING/U-box 166 233 - -
Gabi2058g00001 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Gabi2058g00001 307 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2058g00001 Gabi-Chr2058 27202 30330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2058g00001 121 231 C3H Transcription Factor Family AT5G01980 46.087 1.58e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2058g00001 K11982 - gmx:100787523 523.472