Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2056g00003 ATGTTGATAACGGTAAAGGAAGCTTACGCTTCTTCTCCCCTCTGTTTCTGGCTAAATCGTCTCAAGGCAAAACACTCTAAAGCACTCAAAACTTCAATTTGCCAAGCCAGTTTCTCTGTCCAGAGAAGACCTGTCATGACCACCCACTCATGGTATCCTGGGCATGTTTCTACCAGCAGCAATGAGGTAGCAATTTTTGATCCCTTGGGTATTAACTCAGATTTAAATTCTGCTCTAAATTCTACCTGCAAAAATCTGGTGAGCTTGTTTTCACAAACATTTGAGAGTGCTTCAAGAACAGAAAAGGAAAAGCCTAACCCTTCTCGAGGAGTAGCAGCTGCAATAGAGGATAGTTCAATTGATTTTGGTGACTTCTTTAAAGGTCCACTGCCAGGAAAGTTTCTCAAGCTTTTAGGGTTTCTCGCCTTGTCTCGGCTTGGTGTGTACATACCTCTAGGTGGAGTTAATAGAGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTTTATTAAGCACTCTGGACTCATTTTCTGGAGGAGGTATTGGTAGACTTGGGATATGTTCCCTTGGGATCGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTAGCACAAATATATCCCAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTTCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTACAGGCAATTGGCCAAGTTCTTTACCTACGTCCCTATGTCCACGACTATACTGTAGAGTGGGTTCTTTCTTCTGTTATCTTATTGACTCTTGGCTCTGTGTTTACAACTTACATCGGTGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACGAACATTATCTCGTACTTGCCGGCTTCTTTTGGTAGGACATTTGCACAAGCATTTAACGATGCTAACTACATTGGACTTGTTACCATCATTGTGTCCTTCTTTCTGTTGGTAGTTGGTATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTCTTAACTATGCTTCTAGACTCACCAACAGAAGTAGAGGACTTGAAAAATCTGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCCATCATATTTTCTACATCATCATTGGCTCTTCCTGGTACTTTGGCACGATTCACTGGGTTAAGTGCGCTAAAGAAAGCTGCATTAGCTTTGAATCCAGGGGGTTCCTTCTATCTTCCTTTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATATGAGTGAACAATTGAAACGCCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGCACAGCTACATTTATCAAAACAGTACTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCTATTGTTGAGCAGACAACACACTTGACTGCATTCCGGGGATTTGCCGGAACATCTATTCTTATACTTGTTGGTTGTGCAACAGACACAGCTAGAAAAGTTCAAGCTGAGATTATATCCCAAAAGTACAAGAACATAGAATTCTATGACTTTGATAAGTATTGA 1626 0.4102 MLITVKEAYASSPLCFWLNRLKAKHSKALKTSICQASFSVQRRPVMTTHSWYPGHVSTSSNEVAIFDPLGINSDLNSALNSTCKNLVSLFSQTFESASRTEKEKPNPSRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVHDYTVEWVLSSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYIGLVTIIVSFFLLVVGIVYVQEAERKIPLNYASRLTNRSRGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSALKKAALALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDMSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAIVEQTTHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2056g00003 541 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 126 533 IPR002208 GO:0015031|GO:0016020
Gabi2056g00003 541 ProSitePatterns Protein secY signature 2. 277 294 IPR030659 -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 414 436 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 226 249 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 184 204 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 258 283 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 134 152 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 469 487 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 503 521 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 284 307 - -
Gabi2056g00003 541 PRINTS Preprotein translocase SecY subunit signature 375 394 - -
Gabi2056g00003 541 Hamap Protein translocase subunit SecY [secY]. 122 534 IPR026593 -
Gabi2056g00003 541 ProSitePatterns Protein secY signature 1. 185 204 IPR030659 -
Gabi2056g00003 541 NCBIfam preprotein translocase subunit SecY 133 530 IPR002208 GO:0015031|GO:0016020
Gabi2056g00003 541 FunFam Preprotein translocase subunit SECY, chloroplastic 125 530 - -
Gabi2056g00003 541 SUPERFAMILY Preprotein translocase SecY subunit 126 524 IPR023201 -
Gabi2056g00003 541 Gene3D SecY subunit domain 125 530 IPR023201 -
Gabi2056g00003 541 Pfam SecY 186 517 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2056g00003 Gabi-Chr2056 71704 77690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2056g00003 42 541 Chloroplast and Mitochondria Gene Families AT2G18710 82.036 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2056g00003 K10956 - gmx:100810430 893.649