Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2056g00002 ATGTTGATAACGGTAAAGGAAGCTTACGCTTCTTCTCCCCTCTGTTTCTGGCTAAATCGTCTCAAGGCAAAACACTCTAAAGCACTCAAAACTTCAATTTGCCAAGCCAGTTTCTCTGTCCAGAGAAGACCTGTCATGACCACCCACTCATGGTATCCTGGGCATGTTTCTACCAGCAATGAGGTAGCAATTTTTGATCCCTTGGGTATTAACTCAGATTTAAATTCTGCTCTAAATTCTACCTGCAAAAATCTGGTGAGCTTGTTTTCACAAACATTTGAGAGTGCTTCAAGAACAGAAAAGGAAAAGCCTAACCCTTCTCGAGGAGTAGCAGCTGCAATAGAGGATAGTTCAATTGATTTTGGTGACTTCTTTAAAGGTCCACTGCCAGGAAAGTTTCTCAAGCTTTTAGGGTTTCTCGCCTTGTCTCGGCTTGGTGTGTACATACCTCTAGGTGGAGTTAATAGAGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTTTATTAAGCACTCTGGACTCATTTTCTGGAGGAGGTATTGGTAGACTTGGGATATGTTCCCTTGGGATCGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTAGCACAAATATATCCCAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTTCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTACAGGCAATTGGCCAAGTTCTTTACCTACGTCCCTATGTCCACGACTATACTGTAGAGTGGGTTCTTTCTTCTGTTATCTTATTGACTCTTGGCTCTGTGTTTACAACTTACATCGGTGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACGAACATTATCTCGTACTTGCCGGCTTCTTTTGGTAGGACATTTGCACAAGCATTTAACGATGCTAACTACATTGGACTTGTTACCATCATTGTGTCCTTCTTTCTGTTGGTAGTTGGTATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTCTTAACTATGCTTCTAGACTCACCAACAGAAGTAGAGGACTTGAAAAATCTGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCCATCATATTTTCTACATCATCATTGGCTCTTCCTGGTACTTTGGCACGATTCACTGGGTTAAGTGCGCTAAAGAAAGCTGCATTAGCTTTGAATCCAGGGGGTTCCTTCTATCTTCCTTTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATATGAGTGAACAATTGAAACGCCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGCACAGCTACATTTATCAAAACAGTACTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCTATTGTTGAGCAGACAACACACTTGACTGCATTCCGGGGATTTGCCGGAACATCTATTCTTATACTTGTTGGTTGTGCAACAGACACAGCTAGAAAAGTTCAAGCTGAGATTATATCCCAAAAGTACAAGAACATAGAATTCTATGACTTTGATAAGTATTGA 1623 0.4097 MLITVKEAYASSPLCFWLNRLKAKHSKALKTSICQASFSVQRRPVMTTHSWYPGHVSTSNEVAIFDPLGINSDLNSALNSTCKNLVSLFSQTFESASRTEKEKPNPSRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVHDYTVEWVLSSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYIGLVTIIVSFFLLVVGIVYVQEAERKIPLNYASRLTNRSRGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSALKKAALALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDMSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAIVEQTTHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2056g00002 540 ProSitePatterns Protein secY signature 2. 276 293 IPR030659 -
Gabi2056g00002 540 Gene3D SecY subunit domain 124 529 IPR023201 -
Gabi2056g00002 540 Hamap Protein translocase subunit SecY [secY]. 121 533 IPR026593 -
Gabi2056g00002 540 ProSitePatterns Protein secY signature 1. 184 203 IPR030659 -
Gabi2056g00002 540 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 125 532 IPR002208 GO:0015031|GO:0016020
Gabi2056g00002 540 FunFam Preprotein translocase subunit SECY, chloroplastic 124 529 - -
Gabi2056g00002 540 Pfam SecY 185 516 IPR002208 GO:0015031|GO:0016020
Gabi2056g00002 540 NCBIfam preprotein translocase subunit SecY 132 529 IPR002208 GO:0015031|GO:0016020
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 413 435 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 225 248 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 257 282 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 374 393 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 133 151 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 183 203 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 283 306 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 502 520 - -
Gabi2056g00002 540 PRINTS Preprotein translocase SecY subunit signature 468 486 - -
Gabi2056g00002 540 SUPERFAMILY Preprotein translocase SecY subunit 125 523 IPR023201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2056g00002 Gabi-Chr2056 71704 77690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2056g00002 42 540 Chloroplast and Mitochondria Gene Families AT2G18710 82.036 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2056g00002 K10956 - gmx:100810430 897.116