Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2053g00012 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGACGATGACGACGGCGACACCTCCTCCTTCCTCCTCAACGACGACGACGATGATGATGTTGGACTTGGACCTCTTCCTTTCCCCATCCTCCAAACGGCGCCGTGTGGCTTCGTCGTTACCGACGCGCTTGAACCCGATCACCCTATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGTTACCGTGCTGAGGAAGTCCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGGGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCGACAGTAGTTTCAGAAATTAGAAGATGCCTTGAGGAAGGCATTGAATTCCAAGGTGAGTTGCTGAACTTCAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATTTGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACCGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTATAGTTAAGGAATCTGCTAAAACACCATTTCGGTTTCATTCTGTACTTTCCTCATTGCGTCCTCTTCCAGTAGGGGACCGGAATGTGACTCGTGGAGTTTGTGGGGTATTGCAATTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCTCTTAACTCCAAGAGATATTGCATCGGTTGGTTCTGTCTGTAGGCGATTGTATGAGCTAGCAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAAACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCGAGGGAGCTGACTACTCTTGAAGCTGCAGCATGGAGAAAACTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCCCCTGGTCGTTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCTTTTGGTTGTATTTGGAGGCTGTGGAACACAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCCAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCTAGATCATGGCATAGTTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGATGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATTTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTAACATGGACTCCACCTTCTCGTCTGGGCCACACACTATCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCTAAGAGTGGGCCCCTGCGTTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAACCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGCTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACTGAAGAGAAGCCTACATGGAGAATCCTTAATGTACCTGGACGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTTCTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCTCTGGCAAGTACTGTCATCTAG 1854 0.4849 MEWDSNSDLSGDDDDGDTSSFLLNDDDDDDVGLGPLPFPILQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIFGDDEITHVIGIQFFTEANIDLGPVPGSIVKESAKTPFRFHSVLSSLRPLPVGDRNVTRGVCGVLQLSDEVLSLKILALLTPRDIASVGSVCRRLYELAKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSLLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASTVI 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2053g00012 617 CDD F-box_AtADO-like 204 250 - -
Gabi2053g00012 617 SUPERFAMILY Galactose oxidase, central domain 288 602 IPR011043 -
Gabi2053g00012 617 FunFam Adagio protein 1 38 165 - -
Gabi2053g00012 617 Pfam Galactose oxidase, central domain 364 412 - -
Gabi2053g00012 617 Gene3D PAS domain 38 165 - -
Gabi2053g00012 617 SUPERFAMILY F-box domain 197 266 IPR036047 GO:0005515
Gabi2053g00012 617 Gene3D - 202 249 - -
Gabi2053g00012 617 FunFam Putative LOV domain-containing protein 278 482 - -
Gabi2053g00012 617 NCBIfam PAS domain S-box protein 40 153 IPR000014 -
Gabi2053g00012 617 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2053g00012 617 Pfam PAS domain 45 154 IPR000014 -
Gabi2053g00012 617 Pfam Kelch motif 458 509 IPR011498 GO:0005515
Gabi2053g00012 617 Pfam Kelch motif 525 572 IPR011498 GO:0005515
Gabi2053g00012 617 Pfam F-box-like 213 251 IPR001810 GO:0005515
Gabi2053g00012 617 Gene3D - 515 616 IPR015915 GO:0005515
Gabi2053g00012 617 Gene3D - 277 514 IPR015915 GO:0005515
Gabi2053g00012 617 FunFam Putative LOV domain-containing protein 483 616 - -
Gabi2053g00012 617 Pfam Galactose oxidase, central domain 301 351 - -
Gabi2053g00012 617 SUPERFAMILY PYP-like sensor domain (PAS domain) 44 154 IPR035965 -
Gabi2053g00012 617 CDD PAS 44 146 IPR000014 -
Gabi2053g00012 617 ProSiteProfiles PAS repeat profile. 40 115 IPR000014 -
Gabi2053g00012 617 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 36 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2053g00012 Gabi-Chr2053 139072 149409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2053g00012 41 172 AGC Kinase Gene Family AT5G58140 39.416 8.48e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2053g00012 K12115 - gmx:100802828 1140.95