Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2053g00011 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGACGATGACGACGGCGACACCTCCTCCTTCCTCCTCAACGACGACGACGATGATGATGTTGGACTTGGACCTCTTCCTTTCCCCATCCTCCAAACGGCGCCGTGTGGCTTCGTCGTTACCGACGCGCTTGAACCCGATCACCCTATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGTTACCGTGCTGAGGAATGTCGGGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCGACAGTAGTTTCAGAAATTAGAAGATGCCTTGAGGAAGGCATTGAATTCCAAGGTGAGTTGCTGAACTTCAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATTTGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACCGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTATAGTTAAGGAATCTGCTAAAACACCATTTCGGTTTCATTCTGTACTTTCCTCATTGCGTCCTCTTCCAGTAGGGGACCGGAATGTGACTCGTGGAGTTTGTGGGGTATTGCAATTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCTCTTAACTCCAAGAGATATTGCATCGGTTGGTTCTGTCTGTAGGCGATTGTATGAGCTAGCAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAAACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCGAGGGAGCTGACTACTCTTGAAGCTGCAGCATGGAGAAAACTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCCCCTGGTCGTTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCTTTTGGTTGTATTTGGAGGCTGTGGAACACAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCCAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCTAGATCATGGCATAGTTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGATGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATTTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTAACATGGACTCCACCTTCTCGTCTGGGCCACACACTATCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCTAAGAGTGGGCCCCTGCGTTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAACCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGCTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACTGAAGAGAAGCCTACATGGAGAATCCTTAATGTACCTGGACGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTTCTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCTCTGGCAAGTACTGTCATCTAG 1824 0.483 MEWDSNSDLSGDDDDGDTSSFLLNDDDDDDVGLGPLPFPILQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEECRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIFGDDEITHVIGIQFFTEANIDLGPVPGSIVKESAKTPFRFHSVLSSLRPLPVGDRNVTRGVCGVLQLSDEVLSLKILALLTPRDIASVGSVCRRLYELAKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSLLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASTVI 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2053g00011 607 Gene3D - 192 239 - -
Gabi2053g00011 607 NCBIfam PAS domain S-box protein 40 143 IPR000014 -
Gabi2053g00011 607 SUPERFAMILY PYP-like sensor domain (PAS domain) 40 144 IPR035965 -
Gabi2053g00011 607 Gene3D PAS domain 38 155 - -
Gabi2053g00011 607 Gene3D - 267 504 IPR015915 GO:0005515
Gabi2053g00011 607 Pfam F-box-like 203 241 IPR001810 GO:0005515
Gabi2053g00011 607 SUPERFAMILY Galactose oxidase, central domain 278 592 IPR011043 -
Gabi2053g00011 607 SUPERFAMILY F-box domain 187 256 IPR036047 GO:0005515
Gabi2053g00011 607 Pfam Galactose oxidase, central domain 291 341 - -
Gabi2053g00011 607 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 36 604 - -
Gabi2053g00011 607 Pfam Galactose oxidase, central domain 354 402 - -
Gabi2053g00011 607 Gene3D - 505 606 IPR015915 GO:0005515
Gabi2053g00011 607 Pfam Kelch motif 448 499 IPR011498 GO:0005515
Gabi2053g00011 607 Pfam Kelch motif 515 562 IPR011498 GO:0005515
Gabi2053g00011 607 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2053g00011 607 ProSiteProfiles PAS repeat profile. 40 105 IPR000014 -
Gabi2053g00011 607 CDD F-box_AtADO-like 194 240 - -
Gabi2053g00011 607 Coils Coil 605 607 - -
Gabi2053g00011 607 Pfam PAS domain 45 144 IPR000014 -
Gabi2053g00011 607 CDD PAS 44 136 IPR000014 -
Gabi2053g00011 607 FunFam Putative LOV domain-containing protein 473 606 - -
Gabi2053g00011 607 FunFam Putative LOV domain-containing protein 268 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2053g00011 Gabi-Chr2053 139071 149409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2053g00011 41 162 AGC Kinase Gene Family AT5G58140 36.719 6.32e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2053g00011 K12115 - gmx:100802828 1112.06