Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2053g00009 ATGGATAAATTTCTGAATGATATGGAAAGGGAGAAGCCAATAAGGTTTACTGATCAACAGTTAAGGATTGCAACTGATAACTATTCTATCTTGTTGGGTTCAGGAGGTTTTGGAACAGTTTATAAAGGAATTTTTACTAATGGAACCACTGTAGCTGTGAAGGTTCTACGTGGGAATTCTGACAAGAGAATTGAGGAGCAGTTTATGGCAGAAGTTGGTACAATTGGTAGAATTCATCATTTCAATCTTGTTAGGCTCTATGGATTTTGCTTTGAAAGAAGCTTGATAGCACTGGTTTATGAATACATGGGGAATGGTTCTCTTGATAGGTATCTGTTTCATGAGACGAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCAGTTGGGACAGCAAGAGGCATTGCTTACTTGCATGAAGAGTGTCAACAAAGAATAATCCACTATGATATAAAACCAGGAAATATTCTGTTGGATAGGGACTTTAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTATGCAACAGAGAAAATACTCATATAACCATGACTGGAGGTAGGGGGACTCCTGGTTACGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTTTCAAGTGTGATGTTTACAGCTTTGGCATGCTGTTATTTGAAATAATAGGTAGGAGAAGAAACCTTGACATTAAACTTCATGAAAGTCAGGAATGGTTTCCAATCTGGGCTTGGAAAAAATTTGATGCTGGAGAATTGGAGGAGGTAATATTGGTCTGTGGGATTGAGGAGAAAAATAAGGAGATTGCAGAAAGAATGGTTAAGATAGCTCTTTTATGTGTTCAGTATAGGCCAGAGTCAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCTGCGGAAATTCCAAAACCTTTTAACCCATTTCAGCACATAACGGATGGGATTTTCCCTGGTCAACCAGTGCAAGTTTCACAGACCAATACAACAAGTATTTCTTCTGGCTCTTCTGTTATGGTAACTGACTCTAGTATTGTATGTGCTACTCCTCTTATGAGGAAGTATGAGATTGAATTAGCCTCTAGCAATGGATGA 1095 0.3881 MDKFLNDMEREKPIRFTDQQLRIATDNYSILLGSGGFGTVYKGIFTNGTTVAVKVLRGNSDKRIEEQFMAEVGTIGRIHHFNLVRLYGFCFERSLIALVYEYMGNGSLDRYLFHETKTLGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRDFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITFKCDVYSFGMLLFEIIGRRRNLDIKLHESQEWFPIWAWKKFDAGELEEVILVCGIEEKNKEIAERMVKIALLCVQYRPESRPIMSVVVKMLEGSAEIPKPFNPFQHITDGIFPGQPVQVSQTNTTSISSGSSVMVTDSSIVCATPLMRKYEIELASSNG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2053g00009 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gabi2053g00009 364 Gene3D Transferase(Phosphotransferase) domain 1 103 305 - -
Gabi2053g00009 364 PANTHER OS07G0415500 PROTEIN 4 308 - -
Gabi2053g00009 364 SMART serkin_6 28 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2053g00009 364 Pfam Protein tyrosine and serine/threonine kinase 31 296 IPR001245 GO:0004672|GO:0006468
Gabi2053g00009 364 ProSiteProfiles Protein kinase domain profile. 26 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2053g00009 364 SUPERFAMILY Protein kinase-like (PK-like) 11 297 IPR011009 -
Gabi2053g00009 364 Gene3D Phosphorylase Kinase; domain 1 3 102 - -
Gabi2053g00009 364 FunFam Putative receptor-like protein kinase 103 304 - -
Gabi2053g00009 364 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Gabi2053g00009 364 FunFam serine/threonine-protein kinase PBS1-like 2 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2053g00009 Gabi-Chr2053 109865 111040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2053g00009 15 316 Receptor kinase-like Gene Family AT5G38280 40.566 9.51e-75 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Gabi2053g00009 PK_Tyr_Ser-Thr 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2053g00009 - - gmx:100803355 630.557