Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2053g00008 ATGGATAAATTTCTGAATGATATGGAAAGGGAGAAGCCAATAAGGTTTACTGATCAACAGTTAAGGATAGCAACTGATAACTATTCTATCTTGTTGGGTTCAGGAGGTTTTGGAGCAGTTTATAAGGGAATTTTTACTAATGGAACCACTGCAGCTGTGAAGGTTCTACGTGGGAGTTCAGACAAGAGAATTGAGGAACAGTTTATGGCAGAAGTTGGTACAATTGGTAGAATTCATCATTTCAATCTTGTTAGGCTTTATGGATTTTGTTTAGAAAGAAACTTGATAGCACTGGTTTATGAATACATGGGGAATGGTTCTCTTGATAGGTATCTGTTTCATGAGACCAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCAGTTGGGACAGCAAGAGGCATTGCTTACTTGCACGAAGAGTGTCAACAAAGAATAATCCACTATGATATAAAACCGGGAAATATTCTGTTGGACAGTAACTTTAATCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGAGAAAATACTCATATAAGCATGACTGGAGGTAGGGGAACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTGTGACTCACAAGTGCGATGTTTATAGCTTTGGAATGTTGTTATTTGAAATCATAGGTAAGAGAAGAAACCTTGACATTAATCTTCCTGCTGAAAGCCAGGATTGGTTTCCAATCCGGGTTTGGAAAAAATTTGATGCTGGACAACTGGGGGAATTAGTGATAGCCTGTGGGATAGAAGAGAAAAATAAGGAGATTGCAGAAAGAATGGTTAAGGTGGCTCTGTCATGTGTTCAGTATAGGCCAGAGTCAAGGCCTATAATGAGTGTTGTGGTTAAAATGTTGGAAGGTTCAGTAGAAATTCCCAAACCTTTGAACCCATTTCAGCACTTGATGGGTGAGGCTTTCCCTGGTCATCCACTCCAAGTGTCACAGAACTATATAACAAGTGCTTCTTCTGGCTCTTCTGTTATGGTAACTAACTCTAGCATTGTATGTGCTACTCCTACTATGACAAAGTATGAGATTGAATTAGCCTCTAGCAATGATTGA 1098 0.3953 MDKFLNDMEREKPIRFTDQQLRIATDNYSILLGSGGFGAVYKGIFTNGTTAAVKVLRGSSDKRIEEQFMAEVGTIGRIHHFNLVRLYGFCLERNLIALVYEYMGNGSLDRYLFHETKTLGYEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDSNFNPKVADFGLAKLCNRENTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGKRRNLDINLPAESQDWFPIRVWKKFDAGQLGELVIACGIEEKNKEIAERMVKVALSCVQYRPESRPIMSVVVKMLEGSVEIPKPLNPFQHLMGEAFPGHPLQVSQNYITSASSGSSVMVTNSSIVCATPTMTKYEIELASSND 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2053g00008 365 SUPERFAMILY Protein kinase-like (PK-like) 16 327 IPR011009 -
Gabi2053g00008 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gabi2053g00008 365 ProSiteProfiles Protein kinase domain profile. 26 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2053g00008 365 Pfam Protein tyrosine and serine/threonine kinase 31 297 IPR001245 GO:0004672|GO:0006468
Gabi2053g00008 365 SMART serkin_6 28 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2053g00008 365 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 9 307 - -
Gabi2053g00008 365 Gene3D Phosphorylase Kinase; domain 1 3 102 - -
Gabi2053g00008 365 Gene3D Transferase(Phosphotransferase) domain 1 103 305 - -
Gabi2053g00008 365 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Gabi2053g00008 365 FunFam Putative receptor-like protein kinase 103 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2053g00008 Gabi-Chr2053 73882 75048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2053g00008 15 319 Receptor kinase-like Gene Family AT5G38280 41.346 7.32e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Gabi2053g00008 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2053g00008 - - gmx:100803355 635.565