Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2053g00007 ATGAGTTTTCGGTTTTCTCCACCTTCATTCTACAGTTCACATGATGATTTTCAGACACAGGCGCAAAGCACTTTTGACAAATTTTCTGAAAGTGCTAATTCCACTATGAAATGGGCACTAGTAACGTCTATTGTTCTTGGAGTGGTGGGAATGATAGCAACTGTAGCAATAGTATATGCCATTATTGATTGCTTGAAGAAGGCAGGAACAGCAATTCCAGCTTACTCCCAGCTTTCAACCACAGAGAAGGATCATAAAGATTCTGAGTCATTTCCTTCAAGCAGCAAAATCCAAGTAGTAATACCACCAGATTCAAAAGCTGAATTTGCAACTATGGAAAAATTCCTAAGCAACATCAATAGAGAGAAACCCATAAGATTCTTACCTGAGCAACTTGATGACATTACATGGAACTATTCAATCATATTGGGTTCTGGTGCTTTTGGGGTTGTCTACAAAGGGGAATTGTCAAATGGAGAGCATGTGGCAGTAAAGGTTATCAACAGTTTGGATATGGGAATGGAAGAGCAATTCAAAGCAGAAGTTGGCACCATTGGAAGAACTTACCATATCAATCTAGTAAGACTTTATGGCTTCTGCTTCCACCATGACAAGAGAGCTCTTGTTTATGAGTGTGTGGAAAATGGGTCTCTGGACAAATACTTGTTTGGCAGCCAGAACCATGACACTGAGTTGGGGAAGCTTCATGAGATTGCAATTGGAACAGCTAAAGGAATTGCTTATTTACATGAGGAATGCCAACAAAGAATAATTCATTATGATATTAAACCAGAAAATGTTCTTCTTGACATGAAGTTAGAGCCAAAGGTAGCAGATTTTGGCTTGGCAAAGCTTTGCAGCAGAGAAAGTAACAATGTAGTGAATACACACTTTAGAGGAACCAGGGGATATGCTGCACCAGAAATGTGGAAGCCTTGTCCAGTGACTTACAAGTGTGATGTTTATAGTTTTGGTATTCTTCTCTTTGAAATTGTAGGGAGAAGAAGGCATTTTGATTCTAGCTTCACTGAATCACAGCAATGGTTCCCAAAATGGACATGGGATATGTTTGAGACTAATGAATTAGCTGTAATGCTTTCTCTTTGTGGAATTGAAGAGAAAGACAAAGAGAAAGCTGAGAGAATGTTAATGGTTGCTCTGTGGTGTGTTCAGTATTCACCAGATGATAGACCTCTTATGAGTACTGTGGTGAAGATGTTAGAGGGTGAAATAGATATTTCTCCACCTCCATTTCCCTTCCCAAATCTGGGGTCAGGTAAACCAAACTTGACTCCACAGGGAAGCACTGAAGATTCGGATACTACATCCTCATGGCAGACACAATCTTTTAGAGAATCTGGTTCCAGAACCAAGCACAATACGTTTCAGATTGAAAAATCTATTTAA 1407 0.3945 MSFRFSPPSFYSSHDDFQTQAQSTFDKFSESANSTMKWALVTSIVLGVVGMIATVAIVYAIIDCLKKAGTAIPAYSQLSTTEKDHKDSESFPSSSKIQVVIPPDSKAEFATMEKFLSNINREKPIRFLPEQLDDITWNYSIILGSGAFGVVYKGELSNGEHVAVKVINSLDMGMEEQFKAEVGTIGRTYHINLVRLYGFCFHHDKRALVYECVENGSLDKYLFGSQNHDTELGKLHEIAIGTAKGIAYLHEECQQRIIHYDIKPENVLLDMKLEPKVADFGLAKLCSRESNNVVNTHFRGTRGYAAPEMWKPCPVTYKCDVYSFGILLFEIVGRRRHFDSSFTESQQWFPKWTWDMFETNELAVMLSLCGIEEKDKEKAERMLMVALWCVQYSPDDRPLMSTVVKMLEGEIDISPPPFPFPNLGSGKPNLTPQGSTEDSDTTSSWQTQSFRESGSRTKHNTFQIEKSI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2053g00007 468 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Gabi2053g00007 468 Gene3D Transferase(Phosphotransferase) domain 1 213 413 - -
Gabi2053g00007 468 ProSiteProfiles Protein kinase domain profile. 137 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2053g00007 468 FunFam Putative receptor-like protein kinase 213 415 - -
Gabi2053g00007 468 Gene3D Phosphorylase Kinase; domain 1 104 211 - -
Gabi2053g00007 468 SMART serkin_6 137 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2053g00007 468 MobiDBLite consensus disorder prediction 426 462 - -
Gabi2053g00007 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Gabi2053g00007 468 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 30 418 - -
Gabi2053g00007 468 SUPERFAMILY Protein kinase-like (PK-like) 127 408 IPR011009 -
Gabi2053g00007 468 MobiDBLite consensus disorder prediction 417 468 - -
Gabi2053g00007 468 Pfam Protein kinase domain 142 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2053g00007 Gabi-Chr2053 55677 57466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2053g00007 126 456 Receptor kinase-like Gene Family AT5G38280 39.466 3.82e-79 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Gabi2053g00007 Pkinase 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2053g00007 - - aprc:113852543 760.755