Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2053g00006 ATGGTTGAAAATATGAAGAGAAGCAACTTTGAAGTGTTGGGATTGTGTTGTGCTACAGAAGCGGAACTGGTTGAAAGAATTTTGAAGCCTCTTCATGGAGTAAAAGACATCTCTGTGATAGTCCCTACCAAAACAGTCCATGTGGTCCATGATGTTCTCTTAATTTCTGAGTCACAAATAACTGATACACTGAATATGGCAAGACTTGAAGCTAGTTTGAAGCCACAGGGAGAGGCCAACAATGAAAAAAAATGGCCAGACTTATCTACTATAGCGTGTGGCTTGTTACTAGCACTTTCTTTCTTGAAGTATATATATCCCCCTTTGGGATGGTTGGCTCTTGGTTCTGTTGCCATTGGCTTCCCTAGAGTTCTATTCAGGACCATAGCTTCCATTAGGGCTCTTACTCTTAATATCAACATTCTGGTTCTATTGTCAGTGTGTGGTACTGTTGCTATACAAGATTTTTGGGAGGCTGGAGTCATCATCTTCATGTTCTCCATTGCTCAATGGCTTGAGACATTGGCAACTCACAAGGCAACGGTTGCAATGTCCTCTTTAACTAGCATGGTTCCTCAAAAGGCTGTTGTTGCTGAGACCGGGGAACGTGTTGATGTCAGTGATGTTGAGATCAACACCATCCTAGCGATCAAGGCTGGAGATTCTATTCCTCTTGATGGAGTCGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTCCCTGTTACCAAAGAGTTAGATTCAATAGTCTGGGCTGGAACTATTAATCTGAATGGATATATAAGTGTAAAAGCTACAGTGTTGGCAAATGACACAGTGGTGGCAAGAATGTCAAAACTTGTTGAAGAGGCTTCTAGCAGAAAATCTCGAACACAAAGATTCATAGATAATTTTTCAAAATACTATCTTCCAGTGGTTGTCTTGATTTCAGCTAGCATTGCTGTGGTTCCAGCTGTATTAGGAGTTCCTGATATTAATCCTTGGTTTCATCTGGCAATTGTGGTTTTATTGAGTGCATGCCCTTGTGCTCTCATCCTCTCCACACCTGTTACAATCTTTTGTGCTCTAACAAAAGCTGCAATAAGTGGATTATTACTGAAAGGTGGAGATTATATTGAAACACTATCTGGAATTAAGACAGTTGCTTTTGATAAAACGGGCACAATAACAAGAGGAGAGTTCTCTGTGACAGATTTTTCTGTTGTTGCAGATGACATTAGCATAGAAGCCTTATTGTACTGGGTTTCAAGCATTGAGAGTAAATCAAGTCATCCTATGGCAGCTGCACTAGTGGAATATGGAATGTTGCATTCTATCAAACCCATCCCTGAAAATGTGGAGAATTTTCAAAATTTTCCGGGGGAAGGAATTTTTGGTGCAATTGATGGGAAGGATATATATGTAGGCAATACGAGAATTGGTGTCAGAGCAGGCTGCGAAAGAGTTGATTGTAATGTGCAATTAGTAAGTCAAGAAATTTCAACCCCGAGGGGATCAACTCTGGTTGGAGTCTTCAGCCTGGTTGATACTTGCAGATCAGGTGCTTTGGATGCAATAGAAGAGCTAAAGTCATTAGGTGTGAGATCAGCCATGCTAACAGGAGATAGCACTCAAGCTGCTAAGTATGTTGAGAGTCAGTTGAACCATGCTCTAGACATTGTTCATGCAGAACTTCTACCCGAGGAAAAGGCAGTGATTATTGAGAGTTTCAAGAAAGATGGACTAACAGCCATGGTTGGAGATGGCATGAATGATGCTCCTGCATTAGCTACAGCTGACATTGGTATCTCAATGGGAATATCTGGTTCAGCTCTAGCAAATGAGTCAGGCAATGCAATTCTCATGTCAAATGACATCCGAAAAATACCTGAAGCCATTAAGCTAGCTAGAAAAACTACAAGAAAGCTCATTGAGAATGTCATTATTTCAGTTGTCTCCAAGAGTGCCATACTGGTATTGGCAATTGCAGGATATCCAATAGTTTGGCTTGCTGTGTTGGCTGATGTAGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTGATTTTACAAGAGAAACCAAAGTATGAAAGAGAATCTACAAAGTCTAAATATGGCACCTTCTTGGAAGATAAGACCATAACTCTACTTGACAAGCAAAGTAATAATGATGAGGAGAGCCAAGGGCTTCTTACTGTGGAAAAGTGTGGTAAAGAGTGCTGTAAAAATGTCACTCCTCATTTGGCAACTACAAATGCAACCAAACATGAATCTTCTGAACCTCCAAAGTATAGCTTACTCAAGGGAAACAACCATGGGAACTTTGTCTTGGTTGAGGTTCATATAGGGAAACCTTCCAATGGTTGCGGTGTTGACAATATCGGTAGCCTTAGCCAGCCAGAAATTATTATTGAGTGA 2415 0.4066 MVENMKRSNFEVLGLCCATEAELVERILKPLHGVKDISVIVPTKTVHVVHDVLLISESQITDTLNMARLEASLKPQGEANNEKKWPDLSTIACGLLLALSFLKYIYPPLGWLALGSVAIGFPRVLFRTIASIRALTLNINILVLLSVCGTVAIQDFWEAGVIIFMFSIAQWLETLATHKATVAMSSLTSMVPQKAVVAETGERVDVSDVEINTILAIKAGDSIPLDGVVVEGKCEVDEKMLTGESFPVTKELDSIVWAGTINLNGYISVKATVLANDTVVARMSKLVEEASSRKSRTQRFIDNFSKYYLPVVVLISASIAVVPAVLGVPDINPWFHLAIVVLLSACPCALILSTPVTIFCALTKAAISGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFSVTDFSVVADDISIEALLYWVSSIESKSSHPMAAALVEYGMLHSIKPIPENVENFQNFPGEGIFGAIDGKDIYVGNTRIGVRAGCERVDCNVQLVSQEISTPRGSTLVGVFSLVDTCRSGALDAIEELKSLGVRSAMLTGDSTQAAKYVESQLNHALDIVHAELLPEEKAVIIESFKKDGLTAMVGDGMNDAPALATADIGISMGISGSALANESGNAILMSNDIRKIPEAIKLARKTTRKLIENVIISVVSKSAILVLAIAGYPIVWLAVLADVGTCLLVILNSMLILQEKPKYERESTKSKYGTFLEDKTITLLDKQSNNDEESQGLLTVEKCGKECCKNVTPHLATTNATKHESSEPPKYSLLKGNNHGNFVLVEVHIGKPSNGCGVDNIGSLSQPEIIIE 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2053g00006 804 FunFam Putative cadmium/zinc-transporting ATPase 3 399 517 - -
Gabi2053g00006 804 Pfam E1-E2 ATPase 191 366 - -
Gabi2053g00006 804 SFLD Haloacid Dehalogenase 371 638 - -
Gabi2053g00006 804 Pfam haloacid dehalogenase-like hydrolase 384 599 - -
Gabi2053g00006 804 Gene3D - 177 291 - -
Gabi2053g00006 804 NCBIfam HAD-IC family P-type ATPase 161 410 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2053g00006 804 NCBIfam HAD-IC family P-type ATPase 505 667 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2053g00006 804 PRINTS P-type cation-transporting ATPase superfamily signature 609 621 - -
Gabi2053g00006 804 PRINTS P-type cation-transporting ATPase superfamily signature 585 604 - -
Gabi2053g00006 804 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Gabi2053g00006 804 PRINTS P-type cation-transporting ATPase superfamily signature 531 541 - -
Gabi2053g00006 804 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Gabi2053g00006 804 PRINTS P-type cation-transporting ATPase superfamily signature 509 520 - -
Gabi2053g00006 804 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 692 - -
Gabi2053g00006 804 Gene3D - 1 74 - -
Gabi2053g00006 804 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Gabi2053g00006 804 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
Gabi2053g00006 804 SUPERFAMILY HAD-like 386 686 IPR036412 -
Gabi2053g00006 804 CDD P-type_ATPase_HM 94 687 - -
Gabi2053g00006 804 SUPERFAMILY HMA, heavy metal-associated domain 3 76 IPR036163 GO:0046872
Gabi2053g00006 804 FunFam Putative cadmium/zinc-transporting ATPase 3 2 74 - -
Gabi2053g00006 804 NCBIfam cadmium family heavy metal-translocating P-type ATPase 139 689 - -
Gabi2053g00006 804 SFLD p-type atpase 371 638 IPR044492 -
Gabi2053g00006 804 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 640 IPR023298 -
Gabi2053g00006 804 Gene3D - 379 636 IPR023214 -
Gabi2053g00006 804 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Gabi2053g00006 804 Gene3D - 399 517 IPR023299 GO:0000166
Gabi2053g00006 804 FunFam Copper-transporting ATPase 1, putative 177 291 - -
Gabi2053g00006 804 NCBIfam heavy metal translocating P-type ATPase 139 687 IPR027256 GO:0006812|GO:0016020|GO:0019829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2053g00006 Gabi-Chr2053 39792 45048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2053g00006 3 752 Primary Pumps ATPases AT4G30110 56.505 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2053g00006 K01534 - gmx:100815324 1269.6