Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2048g00001 ACTACAACTACTCAATCAACTAAGGCGCTAGAAATGTTGAGGGAAAATAGAAATAAGTTTGACCTCATTATTACTAACGTAAATATGCCACACATGGATGGATTTAAGCTCCTTGAGATAGTGGGACTTGAAATGGACATACCAGTCATAGTAATGTTGTCAGAATACAGTGACAAAGAGCGAGTGAAGAAAGGTGTTATACATGGCGCATGTGACTACTTAATTAAACCTCCTCGAATTGAAGTGCTGCAGAACATATGGCAACATGTGGTGCGTAAAAAGAGGCCTCGTTTAAATTGGAATACTAATTTGCATACAAAATTTCTTGTTGCAGTTAATCAATTGGGCGTTAAGGAAGCTGTTCCTAAGAAAATACTTTACTTGATGAATGTTGAAGGTCTTACAAGAGAAAATATTGCAAGCCATCTGCAGAAATATAGACTTGCCCTTAAGAAGGAAACTCAACAAGCTAGCACAATTGTTGCATTTGGTCGTAGTAATCCTCACATGCAGATGAGTTCAATAGATACATATGGAGATTTTAGCACATCGTCTGTATCAGGAAGAATCTTAAACACTACACAACCTTTAAATGCATCGGGTGGAAATTTCTGTAACCTGAACTGTCCATCTGGCTTGAACTGGAGAGAAATTAGTTCCTCTACGCTAATCCAGCCTGTTCAGTCACAAAATATAAATAGCTCCATCAAAACACTTGGAAACATCCAGTTGCCCAAGTTTTCTACAAATCAAAGCTCAAGTTTATCACATGGCATTCCGAAATCAAATGAGCTTAACCAATTCAAGCAGTGCAACTATACAACTAGTATTAGGCAATTTAATCCAATTAGTGGGTTAAGTGAATTTATGGTTTCATCTGGATTTCATGACAACTCTTCTCCTTCTGGTGAGGTTTTATACAATGATAAACAACCTCATAATAGCTTGAATTTTTCCTCCTCCGCTTATCATACAGGCAACAATCTAGTTGATTTTTCTTCCACAAGTGATGTTGCTATTCCTTTGGAGAATGCTAAAAGAAGGAAGCTGCATTGCCAATTGAATGAGGACCCTAGTTCATTGAGGCATAGTTTAGACCAAAATAATACAGTTTGCAGCAAGAGAATTAATGCATCATTGGTTGTCCAATCGAATGAGGCTACTCCATTAATCACTCATTCTACAGAAGTTGAGAAATTCTATTTTGAGGAAAGAATAATGTCAAATGATGCCTACATTTCGCAGCGAACAATGCCCCAAGAAGAACCTGTTGAGGAGGATATTTTTGGGTCCTTGGATGATATAAATAATGATAGGATCTAA 1323 0.3719 TTTTQSTKALEMLRENRNKFDLIITNVNMPHMDGFKLLEIVGLEMDIPVIVMLSEYSDKERVKKGVIHGACDYLIKPPRIEVLQNIWQHVVRKKRPRLNWNTNLHTKFLVAVNQLGVKEAVPKKILYLMNVEGLTRENIASHLQKYRLALKKETQQASTIVAFGRSNPHMQMSSIDTYGDFSTSSVSGRILNTTQPLNASGGNFCNLNCPSGLNWREISSSTLIQPVQSQNINSSIKTLGNIQLPKFSTNQSSSLSHGIPKSNELNQFKQCNYTTSIRQFNPISGLSEFMVSSGFHDNSSPSGEVLYNDKQPHNSLNFSSSAYHTGNNLVDFSSTSDVAIPLENAKRRKLHCQLNEDPSSLRHSLDQNNTVCSKRINASLVVQSNEATPLITHSTEVEKFYFEERIMSNDAYISQRTMPQEEPVEEDIFGSLDDINNDRI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2048g00001 440 Gene3D - 95 153 - -
Gabi2048g00001 440 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Gabi2048g00001 440 Gene3D - 1 94 - -
Gabi2048g00001 440 ProSiteProfiles Response regulatory domain profile. 1 91 IPR001789 GO:0000160
Gabi2048g00001 440 SUPERFAMILY CheY-like 6 106 IPR011006 -
Gabi2048g00001 440 Pfam Response regulator receiver domain 2 84 IPR001789 GO:0000160
Gabi2048g00001 440 SUPERFAMILY Homeodomain-like 93 152 IPR009057 -
Gabi2048g00001 440 CDD REC_typeB_ARR-like 1 91 - -
Gabi2048g00001 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 151 IPR017930 -
Gabi2048g00001 440 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 228 IPR045279 GO:0009736
Gabi2048g00001 440 FunFam Two-component response regulator 91 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2048g00001 Gabi-Chr2048 24641 26843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2048g00001 1 255 Response Regulator Gene Family AT4G31920 42.500 8.12e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi2048g00001 Response_reg 6.4e-13 CL0304