Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2044g00016 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAGTTGAGGAAAGGTTTATGGTCTCCTGATGAAGATGAGAAGCTATTCAATTACATTACCAGATTTGGTGTTGGCTGCTGGAGTTCAGTTCCCAAACTAGCTGGGTTGCAAAGATGTGGAAAGAGTTGCAGGTTAAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCGCAGCAGGAGGAGGATCTTATAATCAGTCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAAATAGCAGCACAATTACCAGGGAGAACAGATAATGAGATTAAAAACTTTTGGAATTCATGTCTAAAGAAGAAGCTATTGAAGCAAGGGATTGACCCAACTACACACAAGCCTCTTACTGAAGCTCATGGGAAGGAAGAAACAAAAAGCACAGAGACAACGCCTATACAGATACCATTGTCTCAAGGGCCTTCAGCTGCATCAACCTTAACTTCATCACAGGGTTCAGCACTTCTAATAGGTGATTCGAATTACTATGATTGTGGGCTAACAGAAGCTTCAAGAGAAATTTTCATGACCAAGCCAGCATTGGATCCTTTGTCCTACTATGATTTCCAAATGGGTGTTATGCAATCTGGTTATAACTTACCTCTGAGTCCTTATCACACGAGCCTTAGACCATTTGATCAGAACCAATTTGGACAGAACTCAAGCAATGGATTCTCTTCAATGCCAAGTTTAACCAATTCGGATCATGGGAACGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCAAAAATCAGTTCCTTGTTCATGAATGATCGGGTGAAAGAAAGTTCCAGCAATAGCTCAAACATGAGCACTATTTATCAAGGAGGAGGGTGTCAAACGAACAGCATGATGGAAAATGCAGGGTTCTCGTGGGACGGGGAGAACAAGTTGGACCCTTTGTTTCAGTTCCAAGTCAATGCCATAAAATCCGAGGATTTCAAGACAAGTTCATGGGAAGATCAAGGGCAACTGCAGACTCACAATTCGATAGATTTCACTAGCTTTCCATTAACGTCACTGTCAGAGGATCTAACAGGAGCAAATTTTGATGTGTTCCAGCATATATGA 1116 0.4176 MGRHSCCVKQKLRKGLWSPDEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAHGKEETKSTETTPIQIPLSQGPSAASTLTSSQGSALLIGDSNYYDCGLTEASREIFMTKPALDPLSYYDFQMGVMQSGYNLPLSPYHTSLRPFDQNQFGQNSSNGFSSMPSLTNSDHGNVSVTEFSDNNSASKISSLFMNDRVKESSSNSSNMSTIYQGGGCQTNSMMENAGFSWDGENKLDPLFQFQVNAIKSEDFKTSSWEDQGQLQTHNSIDFTSFPLTSLSEDLTGANFDVFQHI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2044g00016 371 SMART sant 66 114 IPR001005 -
Gabi2044g00016 371 SMART sant 13 63 IPR001005 -
Gabi2044g00016 371 FunFam Transcription factor MYB86 69 137 - -
Gabi2044g00016 371 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2044g00016 371 CDD SANT 70 109 IPR001005 -
Gabi2044g00016 371 Gene3D - 11 67 - -
Gabi2044g00016 371 Gene3D - 69 144 - -
Gabi2044g00016 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi2044g00016 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi2044g00016 371 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi2044g00016 371 CDD SANT 17 61 IPR001005 -
Gabi2044g00016 371 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2044g00016 371 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2044g00016 371 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi2044g00016 371 MobiDBLite consensus disorder prediction 231 256 - -
Gabi2044g00016 371 FunFam Myb transcription factor 11 67 - -
Gabi2044g00016 371 MobiDBLite consensus disorder prediction 123 146 - -
Gabi2044g00016 371 PANTHER MYB DOMAIN PROTEIN 55 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2044g00016 Gabi-Chr2044 246397 247706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2044g00016 1 141 MYB Transcription Factor Family AT1G57560 78.723 2.35e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2044g00016 Myb_DNA-binding 7.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2044g00016 K09422 - gmx:100811140 659.833