Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2044g00012 ATGGCATCATCAAGCTCTTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGAAAATGTATGCCAGGATGCATCTTTGCGCCTTACTTTCCACCTGAAGAGCCTCAAAAATTTGCAAACGTGCACAAAATATTTGGTGCTAGCAATGTGACTAAGCTCCTTAACGAACTACTCCCTCACCAGAGAGAGGATGCAGTGAACTCCCTTGCCTATGAAGCAGAGGCTCGTGTTAGGGACCCAGTTTATGGCTGTGTAGGTGCCATCACTTTCCTTCAGAGACAAGTTCAAAGGCTTCAAAAAGAGCTTGATACTGCTAACGCTGATCTACTCCGTTATTCCTTCACTGAAATCCCTCCAGCTTCTCTTTCTGTGCCTCCAGGACTAACACCAGTTCAACAAATACCCCAAAGGAATTTTAGTACAAGAATTGGTAATGAAGGAAGTGGGTTATATCGCCAATCTCCTACTGCTTATTCTTTTCCTTATTCTCTTCCATGGACTGATACCTCTTCGGAGGACTTCAGTGATGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGTAGGTAATATGTGA 576 0.4497 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVQRLQKELDTANADLLRYSFTEIPPASLSVPPGLTPVQQIPQRNFSTRIGNEGSGLYRQSPTAYSFPYSLPWTDTSSEDFSDGGGGGGGGGGVGNM 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2044g00012 191 Coils Coil 89 109 - -
Gabi2044g00012 191 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gabi2044g00012 191 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Gabi2044g00012 191 MobiDBLite consensus disorder prediction 170 191 - -
Gabi2044g00012 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2044g00012 Gabi-Chr2044 184369 186119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2044g00012 1 169 AS2 family AT5G63090 68.539 6.82e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi2044g00012 LOB 3.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2044g00012 - - gmx:100803667 318.546