Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2044g00002 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTTTACTTCCATACCATTCTTTTACAGCTCTTGCAGTAAACCAACAAGGGGAAGCTCTTCTTTCATGGAAGAGAACCCTGAATGGATCCCTGGAGGTATTGAGTAACTGGAACCCAATTGAAGATACACCATGTAGCTGGTTTGGAGTGAGTTGCAACTCGAACAACGAAGTAGTAGAATTAGATCTGAGGTATGTGGATTTGCTTGGTAAACTTCCTACTAATTTCAACTCATTGCTTTCCTTGAGCAATCTCATCTTAACCGGAACAAACCTCACCGGTTCAATCCCAAAAGAAATAGGCAAACTTGGCGAACTCAGCTACTTGGAGTTGAGTGACAATGCCTTGAGTGGCGAAATCCCAAGTGAGCTCTGCTACTTGCCCAAACTTGAGGAACTCCATCTGAATTCCAACGAGCTCGTGGGGTCGATTCCAGTTGAAATTGGGAACCTCACAAAGTTGAAGAAGCTGACCTTATATGACAATCAACTGAGTGGTCAAATTCCTAGCACCATAGGCAACCTGAGGAACCTGCAAGTGATAAGAGCTGGAGGAAACAAGAACCTTGAAGGTCCTTTACCACAAGAAATTGGCAACTGTTCCAATTTGGTCATGTTGGGCCTGGCTGAAACAAGCATCTCGGGTTTTCTTCCACCAACTCTTGGCCTCCTCAAGAAGCTTGAAACCATAGCCATTTACACTTCCCTCCTCTCTGGCCAAATACCCCCTGAACTTGGTGACTGCACCGAGCTCCAAAACATTTATCTTTACGAGAACTCCCTCACTGGATCCATACCAACCAAATTGGGGAATCTCAGCAACCTCAAGAACCTTCTTCTCTGGCAAAACAATTTAGTTGGCACCATCCCACCAGAGATTGGAAACTGCAACCAGTTATCAGTCATTGACGTGTCAATGAATTCAATAACCGGAAGCATTCCCAAAAGTTTTGGGAACTTGACTTCGCTACAAGAACTCCAACTCAGTGTCAACCAGATTTCGGGTGAGATTCCGGAAGAACTAGGAAACTGTGAGCAACTCACTCACGTGGAGCTGGACAACAATCTAATCATGGGGACGATACCTTCCGAATTTGGAAACCTTGGGAATCTAACGTTGTTGTTCCTGTGGCACAACAAGTTACAAGGTACCATACCCTCGTCCCTTTCCAATTGTCAAAACCTAGAGGCTCTTGATCTCTCGCAGAATGGATTGACGGGTCCCATACCAAAGGGGATATTCCAGCTCAAGAATCTCAACAAGCTTTTGCTTCTCTCTAACAATCTCTCTGGGAAAATCCCCTCTGAGATTGGGAATTGTTCCTCTCTTATTCGCTTCCGGGCAAACAACAACAACATCACCGGCAACATTCCCTCCCAGATTGGGAATCTCAAAAATTTGAATTTCTTGGACCTTGGAAGCAATCGGATTTCAGGAGTTATCCCGGAGGAGATATCCGGCAGCCGGAATCTCACTTTTTTGGACTTACATTCAAACTTCATTGCCGGAAACTTGCCGGAAAGTCTGAGCCTGCTCGTCTCGCTTCAATTCCTCGATTTCTCCGATAACATGATCGAAGGCACACTGAGCCCTACCCTCGGCTCTCTTGCTGCTCTAACCAAACTGGTTCTCGGAAAGAATCGGATCTCAGGCTCAATTCCGAGTCAACTCGGATCTTGTGTCAAGCTGCAGCTGCTAGACCTCAGCTGCAACCAGTTCTCCGGCGAAATTCCAGGTAGCATCGGCAACATTCCGGCCTTAGAGATAGCTATGAATCTTAGCTGGAACCAACTCTCCGGCGAGATCCCTCAGGATTTTTCGGGTTTGGAGAAGCTCGGAGTCTTGGACATATCCCACAACTTTCTCGCCGGAAACCTGCAGTATCTCGCCGGTCTGCAAAATCTCGTGGTCCTCAATATCTCGTACAACAAATTCTCCGGGCGCGTTCCGGACACGCCTTTCTTCGCGAAGCTGCCCCTGAGCGTGCTCGCCGGGAACCCGTCGCTATGCTTGACCGGCAATCAATGCGCCGGCGAAGGCTACGGGAAATCCGGGCGGCGTGCGAGGCAGGCGCGAGTGGCAATGGTGGTCCTGCTGTGCACCGCGTGCGTGCTCCTCATGGCGGCGCTGTACGTCGTCGTGGCGGCAAAACGACGAAGGGACAAAGAAAACGACGTTGACCTCGATGGAAAGGATAGCGACGTAGACATGACCCCACCTTGGGAGGTGACCCTGTACCAGAAGCTCGACTTGTCAATGTCTGACGTAGCAAAATGCCTCTTTGCTGGCAACGTCATTGGACACGGGCGATCCGGCGTCGTTTACAAGGTGAACTTGCCGGCGACGGGATTATCCATCGCGGTGAAAAAGTTCAGGTCGTCGGAGAAATTTTCTGCGGCGGCGTTTTCGTCGGAGATTGCTACGCTGGCGCGAATTCGGCACCGGAATATCGTGCGGTTATTGGGTTGGGGTGCGAACCGGAGAACGAAGTTACTGTTCTATGATTATTTACCGAACGGTAATTTGGATACGCTGTTACACGAGGGGTGCACAGGATTAATCGAGTGGGAGACGCGGCTCAAGATAGCACTGGGCGTGGCTGAGGGTGTGGCTTACTTGCACCACGATTGCGTGCCTGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTCTGTTAGGAGACAGATATGAACCCTGTTTGGCTGATTTTGGATTCGCTCGCTTCGTCGAAGAAGATCACGCTTCCTTTTCCGTTAATCCACAGTTCGCCGGTTCTTACGGCTACATTGCTCCCGAGTATGCTTGCATGCTTAAAATCACAGAGAAGAGCGATGTATACAGCTTTGGGGTGGTCCTACTAGAGATAATAACGGGGAAAAGGCCAGTGGATCCATCATTCCCAGATGGACAACATGTTATTCAATGGGTCAGAGATCACTTAAAGAGCAAGAAGGATCCAATTGAGATTCTGGATGCTAAGCTTCAAAGTCATCCAGACACACAAATACAAGAGATGCTACAAGCACTTGGTATATCTCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCGACAATGAAAGATGTCGCTGCATTATTAAGAGAAATTCGACACGATCCTCCAGCAGGGGCTGAGCCCCACAAGCTCAAAAGAACCGAAACTTCGTCCTATTCATCTTCCTCAGTTACCCCTGCTCAGTTGTTGCTCCTCCAATCCAATTCCCATTCCTCATCACTTGCTTATTCGTCTTCCTCAGCAGCAGGCTACCACCCCACTAAGGAATCAATCATGAATTGA 3342 0.4865 MPVNPWTLFFLCISLLLPYHSFTALAVNQQGEALLSWKRTLNGSLEVLSNWNPIEDTPCSWFGVSCNSNNEVVELDLRYVDLLGKLPTNFNSLLSLSNLILTGTNLTGSIPKEIGKLGELSYLELSDNALSGEIPSELCYLPKLEELHLNSNELVGSIPVEIGNLTKLKKLTLYDNQLSGQIPSTIGNLRNLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSISGFLPPTLGLLKKLETIAIYTSLLSGQIPPELGDCTELQNIYLYENSLTGSIPTKLGNLSNLKNLLLWQNNLVGTIPPEIGNCNQLSVIDVSMNSITGSIPKSFGNLTSLQELQLSVNQISGEIPEELGNCEQLTHVELDNNLIMGTIPSEFGNLGNLTLLFLWHNKLQGTIPSSLSNCQNLEALDLSQNGLTGPIPKGIFQLKNLNKLLLLSNNLSGKIPSEIGNCSSLIRFRANNNNITGNIPSQIGNLKNLNFLDLGSNRISGVIPEEISGSRNLTFLDLHSNFIAGNLPESLSLLVSLQFLDFSDNMIEGTLSPTLGSLAALTKLVLGKNRISGSIPSQLGSCVKLQLLDLSCNQFSGEIPGSIGNIPALEIAMNLSWNQLSGEIPQDFSGLEKLGVLDISHNFLAGNLQYLAGLQNLVVLNISYNKFSGRVPDTPFFAKLPLSVLAGNPSLCLTGNQCAGEGYGKSGRRARQARVAMVVLLCTACVLLMAALYVVVAAKRRRDKENDVDLDGKDSDVDMTPPWEVTLYQKLDLSMSDVAKCLFAGNVIGHGRSGVVYKVNLPATGLSIAVKKFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIEWETRLKIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVRDHLKSKKDPIEILDAKLQSHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHDPPAGAEPHKLKRTETSSYSSSSVTPAQLLLLQSNSHSSSLAYSSSSAAGYHPTKESIMN 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2044g00002 1113 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Gabi2044g00002 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Gabi2044g00002 1113 Gene3D Ribonuclease Inhibitor 141 203 IPR032675 -
Gabi2044g00002 1113 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Gabi2044g00002 1113 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 425 693 - -
Gabi2044g00002 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1066 - -
Gabi2044g00002 1113 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Gabi2044g00002 1113 Gene3D Ribonuclease Inhibitor 204 435 IPR032675 -
Gabi2044g00002 1113 Gene3D Ribonuclease Inhibitor 436 691 IPR032675 -
Gabi2044g00002 1113 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Gabi2044g00002 1113 SUPERFAMILY RNI-like 99 457 - -
Gabi2044g00002 1113 MobiDBLite consensus disorder prediction 1053 1073 - -
Gabi2044g00002 1113 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 301 1047 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 478 501 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 382 405 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 406 435 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 165 191 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 334 357 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 623 648 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 117 149 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 262 288 - -
Gabi2044g00002 1113 SMART LRR_sd22_2 526 541 - -
Gabi2044g00002 1113 Pfam Protein kinase domain 778 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2044g00002 1113 SUPERFAMILY L domain-like 375 685 - -
Gabi2044g00002 1113 Gene3D Transferase(Phosphotransferase) domain 1 851 1068 - -
Gabi2044g00002 1113 MobiDBLite consensus disorder prediction 1053 1067 - -
Gabi2044g00002 1113 SMART serkin_6 774 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2044g00002 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Gabi2044g00002 1113 Gene3D Phosphorylase Kinase; domain 1 758 850 - -
Gabi2044g00002 1113 Pfam Leucine rich repeat 463 513 IPR001611 GO:0005515
Gabi2044g00002 1113 Pfam Leucine rich repeat 384 443 IPR001611 GO:0005515
Gabi2044g00002 1113 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Gabi2044g00002 1113 SMART LRR_typ_2 478 502 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 286 310 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 407 430 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 141 164 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 382 406 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 117 139 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 550 574 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 334 358 IPR003591 -
Gabi2044g00002 1113 SMART LRR_typ_2 165 189 IPR003591 -
Gabi2044g00002 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Gabi2044g00002 1113 ProSiteProfiles Protein kinase domain profile. 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2044g00002 1113 SUPERFAMILY Protein kinase-like (PK-like) 766 1050 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2044g00002 Gabi-Chr2044 32944 37496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2044g00002 25 1101 Receptor kinase-like Gene Family AT5G56040 54.880 0.0 1138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2044g00002 Pkinase 7.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2044g00002 - - gmx:100778064 1837.77