Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2043g00032 ATGCCAGGCACTGAAGTTGCTGTTGCTCCAAAAAGACGCCAAAGAATTTTGGATTCAGCTGGAGATTCACATCTAGACTCCTGTGCTAAAGAGCATACTGCAAAGATGCTGCTACGTATACAAGATTCAGATGGGTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATATAGGGCTTACATCTGTTGCTTTTGTTCACCCAGAAACTGCAAAACACTTCTCGTTTAACATGCTTCAGTTGGTTTCCATAGTGCCAAGAGTGTCCAAGGAGAATGTTAAAATTTCCAGAACCAATACTATGAAAGTCAAAGGCGGGTCAGCTGTTAATGAAGTTGAGAATGGAAATACTGACAAGAAAGAATATCAACAGACAATTGTTCATCTATTGATTTCAGACTCTGTGGCTGAGGGACATGTAATGATAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGTATGTGATGTTATTTTGGAAAAAAATATTCCTTCGATCTCTCTTTATCCTTGCCAATTCAAACTGTCAAGGCAGGAGAATGCTGTTGAGAAAAATGGTCCAGAAGTTTTCAATGGCCACAAGAATCACATCGATGAAAAATTGCTTTCAAAAGCTTCTTCAGGTGTCTTTATGGATACTATAGATTGGTCCATCCACAATGAAGTTGTTGCAGCTCTCTCAGATGAATCCAATTACAAGGCAGAGGAAGAGGTTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGAGTCTTGTACGATTATGGTATATAGCCCAACTTGAGGCAATCACTTCCATTACGGGTATGGAGGTAAATTCATTGGTTATGGGTAGTAAAACCTTGCTTCATTTTGAATTAAGCTGTTACAAGCTTGGGAGCAATGGGAAGGTTCAGCTAGCTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCGGGAATGTTATTTTTATTGACCTTCGGTGAAGAAAATCTGCATCACAGGAAACCTACTGCATATGAAGTTGCTCTTGGCGGAAGTCTCAATAACATCAATATTGGGGATCTGAAGCTTTTTGAAAGGATGAAATCGGGTGATCCCATGTCTATTCATTCTATAGAAGAGAGAGCCTCTGACGTCCACATTAGTTCAAATGTATCTTTCCTTGGTTGGATGGGGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCGGCATCTGGTTTGTGGTTTGGCTCATACAACTTGCCACTCCCTGGGCATGTTCTAATATATGGACCTCCAGGCTCTGGGAAAACTATGTTGGCAAGGACTGTGGCAAAATCCCTTGAGAATCATGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCAAATTATTCGCAAAGAACTTTCAAACCATGTCACTGAAGCTTTAAATCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCCCTGACTCCGAAGGATCTCAGCCTTCAATGTCTGTTACTGGACTAACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAAATCATGTGGATTCGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCCGCTCCTGCAGCTTCAGAGCGCAGGGCCATGTTGAAGCATGAAATACAAAGGCGTCGCTTGCAATGTGATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATGCTAGTTGACAGAGCAGTTCATTCTGCTGTTCGTCGGTTTTTGCCATCTAATGCCGCCATTTATGAGCATGAGAGTCCTGCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCTGTTGCAATGCGTGACATCACAAAATCTGCTTCCGACGATGGCCGTTCTGGATGGGACGATGTGGGTGGCCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAATTTCCAAAAACTTTTGCCCAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCATTACGATTCATATCAGTGAAAGGGCCTGAGCTATTAAACAAGTACATTGGAGCTTCTGAACAAGCTGTCAGGGATATATTCTCTAAAGCAGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAGTTTGATTCTATTGCCCCTAAGAGAGGGCATGACAATACTGGAGTAACAGATCGTGTTGTTAATCAATTTCTAACTGAGTTAGACGGTGTTGAGATTTTAACTGGTGTGTTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCACTGTTGAGACCTGGTAGGTTAGATCGACTTCTATTCTGCGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCCCTAGCTAATTTGACTAAGGGATTCAGCGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAATGTGGATGCCTCTGGGCCAGAAAAGATACTGGTTATTACTGATGCACTTCTGAAGTTCACTGCATCCAAGGCTAGACCATCTGTCTCCGAAGAAGAGAAAAGAAGACTCTACAATATTTATCACCAGTTCCTAGATTCAAAGAGATCCGTTGCTGCTCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCTTGA 2907 0.4197 MPGTEVAVAPKRRQRILDSAGDSHLDSCAKEHTAKMLLRIQDSDGLCRTSTHVKGVELHIGLTSVAFVHPETAKHFSFNMLQLVSIVPRVSKENVKISRTNTMKVKGGSAVNEVENGNTDKKEYQQTIVHLLISDSVAEGHVMIAKSLRLYLRASLHSWVYLKVCDVILEKNIPSISLYPCQFKLSRQENAVEKNGPEVFNGHKNHIDEKLLSKASSGVFMDTIDWSIHNEVVAALSDESNYKAEEEVANQSQNQKGLQSLVRLWYIAQLEAITSITGMEVNSLVMGSKTLLHFELSCYKLGSNGKVQLAYNSSENSGKAAGMLFLLTFGEENLHHRKPTAYEVALGGSLNNINIGDLKLFERMKSGDPMSIHSIEERASDVHISSNVSFLGWMGKTASDVINRMLVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTMLARTVAKSLENHEDILAHIIFVSCSKLALEKVQIIRKELSNHVTEALNHAPSIVIFDDLDSIISTPDSEGSQPSMSVTGLTDFLVDIMDEYGEKRQKSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRRLQCDDDILLDVAVKCDGYDGYDLEMLVDRAVHSAVRRFLPSNAAIYEHESPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAALANLTKGFSGADLQALLSDAQLAAVHDVLDNVDASGPEKILVITDALLKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDAKGKRATLA 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2043g00032 968 Gene3D - 387 575 IPR027417 -
Gabi2043g00032 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 655 IPR027417 -
Gabi2043g00032 968 Gene3D - 676 938 IPR027417 -
Gabi2043g00032 968 ProSitePatterns AAA-protein family signature. 815 833 IPR003960 GO:0005524|GO:0016887
Gabi2043g00032 968 SMART AAA_5 424 576 IPR003593 GO:0016887
Gabi2043g00032 968 SMART AAA_5 711 847 IPR003593 GO:0016887
Gabi2043g00032 968 Gene3D - 846 925 - -
Gabi2043g00032 968 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 904 923 - -
Gabi2043g00032 968 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 432 451 - -
Gabi2043g00032 968 PANTHER AAA-FAMILY ATPASE 81 940 - -
Gabi2043g00032 968 FunFam Peroxisome biogenesis protein 1 381 575 - -
Gabi2043g00032 968 Gene3D - 576 655 - -
Gabi2043g00032 968 FunFam Peroxisome biogenesis protein 1 576 656 - -
Gabi2043g00032 968 Pfam AAA+ lid domain 867 905 IPR041569 -
Gabi2043g00032 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 940 IPR027417 -
Gabi2043g00032 968 FunFam Nuclear valosin-containing protein-like 673 851 - -
Gabi2043g00032 968 CDD RecA-like_PEX1_r2 686 843 - -
Gabi2043g00032 968 Pfam ATPase family associated with various cellular activities (AAA) 428 573 IPR003959 GO:0005524|GO:0016887
Gabi2043g00032 968 Pfam ATPase family associated with various cellular activities (AAA) 715 842 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2043g00032 Gabi-Chr2043 193998 218098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2043g00032 709 907 Calmodulin-binding Proteins AT3G56690 40.000 1.74e-37 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2043g00032 K13338 - gmx:100803882 1669.83