Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2043g00031 ATGGAGTTAGAGGTAAAAGTAGTTGGAGGCATAGACAACTGTTTCGTATCCCTTCCTCTTCCTCTAATCCAAACTCTACACTCCACACGATCAGCTCCTCTTCCTGAAATCGTTGCTCTCGAGCTTCGCTCTCTCACTAACCCCTCACAGTCACACACATGGTTCGTCGCTTGGTCCGGAGCCACTTCTGCTTCTTCCGCCATAGAGGTTTCTCAACGATTTGCGGAATGCGTTTTGTTACCGGATCATGCTAGAGTTCAAGTGAGAGCTGCTTCTAATGTGCCACATGCTTCTCTGGTCACGATAGAGCCTCACACGGAGGATGACTGGGAAATCTTGGAGCTCAATTCTGATCAAGCGGAGGCTGCAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATCACATTCCATGTGGCTTCCGTTTTTCCGAAGAAAGCGGTGGTACAACTCATGCCAGGCACTGAAGTTGCTGTTGCTCCAAAAAGACGCCAAAGAATTTTGGATTCAGCTGGAGATTCACATCTAGACTCCTGTGCTAAAGAGCATACTGCAAAGATGCTGCTACGTATACAAGATTCAGATGGGTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATATAGGGCTTACATCTGTTGCTTTTGTTCACCCAGAAACTGCAAAACACTTCTCGTTTAACATGCTTCAGTTGGTTTCCATAGTGCCAAGAGTGTCCAAGGAGAATGTTAAAATTTCCAGAACCAATACTATGAAAGTCAAAGGCGGGTCAGCTGTTAATGAAGTTGAGAATGGAAATACTGACAAGAAAGAATATCAACAGACAATTGTTCATCTATTGATTTCAGACTCTGTGGCTGAGGGACATGTAATGATAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGTATGTGATGTTATTTTGGAAAAAAATATTCCTTCGATCTCTCTTTATCCTTGCCAATTCAAACTGTCAAGGCAGGAGAATGCTGTTGAGAAAAATGGTCCAGAAGTTTTCAATGGCCACAAGAATCACATCGATGAAAAATTGCTTTCAAAAGCTTCTTCAGGTGTCTTTATGGATACTATAGATTGGTCCATCCACAATGAAGTTGTTGCAGCTCTCTCAGATGAATCCAATTACAAGGCAGAGGAAGAGGTTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGAGTCTTGTACGATTATGGTATATAGCCCAACTTGAGGCAATCACTTCCATTACGGGTATGGAGGTAAATTCATTGGTTATGGGTAGTAAAACCTTGCTTCATTTTGAATTAAGCTGTTACAAGCTTGGGAGCAATGGGAAGGTTCAGCTAGCTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCGGGAATGTTATTTTTATTGACCTTCGGTGAAGAAAATCTGCATCACAGGAAACCTACTGCATATGAAGTTGCTCTTGGCGGAAGTCTCAATAACATCAATATTGGGGATCTGAAGCTTTTTGAAAGGATGAAATCGGGTGATCCCATGTCTATTCATTCTATAGAAGAGAGAGCCTCTGACGTCCACATTAGTTCAAATGTATCTTTCCTTGGTTGGATGGGGAAAACTGCTTCTGATGTTATCAAATCTGGTTTGTGGTTTGGCTCATACAACTTGCCACTCCCTGGGCATGTTCTAATATATGGACCTCCAGGCTCTGGGAAAACTATGTTGGCAAGGACTGTGGCAAAATCCCTTGAGAATCATGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCAAATTATTCGCAAAGAACTTTCAAACCATGTCACTGAAGCTTTAAATCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCCCTGACTCCGAAGGATCTCAGCCTTCAATGTCTGTTACTGGACTAACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAAATCATGTGGATTCGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCCGCTCCTGCAGCTTCAGAGCGCAGGGCCATGTTGAAGCATGAAATACAAAGGCGTCGCTTGCAATGTGATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATGCTAGTTGACAGAGCAGTTCATTCTGCTGTTCGTCGGTTTTTGCCATCTAATGCCGCCATTTATGAGCATGAGAGTCCTGCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCTGTTGCAATGCGTGACATCACAAAATCTGCTTCCGACGATGGCCGTTCTGGATGGGACGATGTGGGTGGCCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAATTTCCAAAAACTTTTGCCCAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCATTACGATTCATATCAGTGAAAGGGCCTGAGCTATTAAACAAGTACATTGGAGCTTCTGAACAAGCTGTCAGGGATATATTCTCTAAAGCAGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAGTTTGATTCTATTGCCCCTAAGAGAGGGCATGACAATACTGGAGTAACAGATCGTGTTGTTAATCAATTTCTAACTGAGTTAGACGGTGTTGAGATTTTAACTGGTGTGTTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCACTGTTGAGACCTGGTAGGTTAGATCGACTTCTATTCTGCGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCCCTAGCTAATTTGACTAAGGGATTCAGCGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAATGTGGATGCCTCTGGGCCAGAAAAGATACTGGTTATTACTGATGCACTTCTGAAGTTCACTGCATCCAAGGCTAGACCATCTGTCTCCGAAGAAGAGAAAAGAAGACTCTACAATATTTATCACCAGTTCCTAGATTCAAAGAGATCCTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCTTGA 3357 0.4293 MELEVKVVGGIDNCFVSLPLPLIQTLHSTRSAPLPEIVALELRSLTNPSQSHTWFVAWSGATSASSAIEVSQRFAECVLLPDHARVQVRAASNVPHASLVTIEPHTEDDWEILELNSDQAEAAILNQVRIVHEGMRFPLWLHGHTVITFHVASVFPKKAVVQLMPGTEVAVAPKRRQRILDSAGDSHLDSCAKEHTAKMLLRIQDSDGLCRTSTHVKGVELHIGLTSVAFVHPETAKHFSFNMLQLVSIVPRVSKENVKISRTNTMKVKGGSAVNEVENGNTDKKEYQQTIVHLLISDSVAEGHVMIAKSLRLYLRASLHSWVYLKVCDVILEKNIPSISLYPCQFKLSRQENAVEKNGPEVFNGHKNHIDEKLLSKASSGVFMDTIDWSIHNEVVAALSDESNYKAEEEVANQSQNQKGLQSLVRLWYIAQLEAITSITGMEVNSLVMGSKTLLHFELSCYKLGSNGKVQLAYNSSENSGKAAGMLFLLTFGEENLHHRKPTAYEVALGGSLNNINIGDLKLFERMKSGDPMSIHSIEERASDVHISSNVSFLGWMGKTASDVIKSGLWFGSYNLPLPGHVLIYGPPGSGKTMLARTVAKSLENHEDILAHIIFVSCSKLALEKVQIIRKELSNHVTEALNHAPSIVIFDDLDSIISTPDSEGSQPSMSVTGLTDFLVDIMDEYGEKRQKSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRRLQCDDDILLDVAVKCDGYDGYDLEMLVDRAVHSAVRRFLPSNAAIYEHESPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAALANLTKGFSGADLQALLSDAQLAAVHDVLDNVDASGPEKILVITDALLKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSSRDAKGKRATLA 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2043g00031 1118 PANTHER AAA-FAMILY ATPASE 236 1097 - -
Gabi2043g00031 1118 Gene3D - 556 729 IPR027417 -
Gabi2043g00031 1118 SUPERFAMILY Cdc48 domain 2-like 95 173 IPR029067 -
Gabi2043g00031 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 809 IPR027417 -
Gabi2043g00031 1118 Pfam ATPase family associated with various cellular activities (AAA) 869 996 IPR003959 GO:0005524|GO:0016887
Gabi2043g00031 1118 Pfam ATPase family associated with various cellular activities (AAA) 582 727 IPR003959 GO:0005524|GO:0016887
Gabi2043g00031 1118 SUPERFAMILY ADC-like 10 90 IPR009010 -
Gabi2043g00031 1118 FunFam Peroxisome biogenesis factor 1 95 174 - -
Gabi2043g00031 1118 Pfam Peroxisome biogenesis factor 1, N-terminal 100 173 IPR015342 GO:0005524|GO:0005777|GO:0007031
Gabi2043g00031 1118 Gene3D - 95 174 - -
Gabi2043g00031 1118 ProSitePatterns AAA-protein family signature. 969 987 IPR003960 GO:0005524|GO:0016887
Gabi2043g00031 1118 FunFam Nuclear valosin-containing protein-like 827 1005 - -
Gabi2043g00031 1118 Gene3D - 830 1092 IPR027417 -
Gabi2043g00031 1118 FunFam Peroxisome biogenesis protein 1 730 810 - -
Gabi2043g00031 1118 Pfam AAA+ lid domain 1021 1059 IPR041569 -
Gabi2043g00031 1118 SMART AAA_5 865 1001 IPR003593 GO:0016887
Gabi2043g00031 1118 SMART AAA_5 578 730 IPR003593 GO:0016887
Gabi2043g00031 1118 Gene3D - 1000 1079 - -
Gabi2043g00031 1118 CDD RecA-like_PEX1_r2 840 997 - -
Gabi2043g00031 1118 FunFam Peroxisome biogenesis protein 1 544 729 - -
Gabi2043g00031 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 1094 IPR027417 -
Gabi2043g00031 1118 Gene3D - 730 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2043g00031 Gabi-Chr2043 193007 218098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2043g00031 579 785 Calmodulin-binding Proteins AT3G56690 30.288 1.01e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2043g00031 K13338 - gmx:100803882 1899.4