Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2043g00030 ATGGAGTTAGAGGTAAAAGTAGTTGGAGGCATAGACAACTGTTTCGTATCCCTTCCTCTTCCTCTAATCCAAACTCTACACTCCACACGATCAGCTCCTCTTCCTGAAATCGTTGCTCTCGAGCTTCGCTCTCTCACTAACCCCTCACAGTCACACACATGGTTCGTCGCTTGGTCCGGAGCCACTTCTGCTTCTTCCGCCATAGAGGTTTCTCAACGATTTGCGGAATGCGTTTTGTTACCGGATCATGCTAGAGTTCAAGTGAGAGCTGCTTCTAATGTGCCACATGCTTCTCTGGTCACGATAGAGCCTCACACGGAGGATGACTGGGAAATCTTGGAGCTCAATTCTGATCAAGCGGAGGCTGCAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATCACATTCCATGTGGCTTCCGTTTTTCCGAAGAAAGCGGTGGTACAACTCATGCCAGGCACTGAAGTTGCTGTTGCTCCAAAAAGACGCCAAAGAATTTTGGATTCAGCTGGAGATTCACATCTAGACTCCTGTGCTAAAGAGCATACTGCAAAGATGCTGCTACGTATACAAGATTCAGATGGGTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATATAGGGCTTACATCTGTTGCTTTTGTTCACCCAGAAACTGCAAAACACTTCTCGTTTAACATGCTTCAGTTGGTTTCCATAGTGCCAAGAGTGTCCAAGGAGAATGTTAAAATTTCCAGAACCAATACTATGAAAGTCAAAGGCGGGTCAGCTGTTAATGAAGTTGAGAATGGAAATACTGACAAGAAAGAATATCAACAGACAATTGTTCATCTATTGATTTCAGACTCTGTGGCTGAGGGACATGTAATGATAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGTATGTGATGTTATTTTGGAAAAAAATATTCCTTCGATCTCTCTTTATCCTTGCCAATTCAAACTGTCAAGGCAGGAGAATGCTGTTGAGAAAAATGGTCCAGAAGTTTTCAATGGCCACAAGAATCACATCGATGAAAAATTGCTTTCAAAAGCTTCTTCAGGTGTCTTTATGGATACTATAGATTGGTCCATCCACAATGAAGTTGTTGCAGCTCTCTCAGATGAATCCAATTACAAGGCAGAGGAAGAGGTTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGAGTCTTGTACGATTATGGTATATAGCCCAACTTGAGGCAATCACTTCCATTACGGGTATGGAGGTAAATTCATTGGTTATGGGTAGTAAAACCTTGCTTCATTTTGAATTAAGCTGTTACAAGCTTGGGAGCAATGGGAAGGTTCAGCTAGCTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCGGGAATGTTATTTTTATTGACCTTCGGTGAAGAAAATCTGCATCACAGGAAACCTACTGCATATGAAGTTGCTCTTGGCGGAAGTCTCAATAACATCAATATTGGGGATCTGAAGCTTTTTGAAAGGATGAAATCGGGTGATCCCATGTCTATTCATTCTATAGAAGAGAGAGCCTCTGACGTCCACATTAGTTCAAATGTATCTTTCCTTGGTTGGATGGGGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCGGCATCTGGTTTGTGGTTTGGCTCATACAACTTGCCACTCCCTGGGCATGTTCTAATATATGGACCTCCAGGCTCTGGGAAAACTATGTTGGCAAGGACTGTGGCAAAATCCCTTGAGAATCATGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCAAATTATTCGCAAAGAACTTTCAAACCATGTCACTGAAGCTTTAAATCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCCCTGACTCCGAAGGATCTCAGCCTTCAATGTCTGTTACTGGACTAACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAAATCATGTGGATTCGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCCGCTCCTGCAGCTTCAGAGCGCAGGGCCATGTTGAAGCATGAAATACAAAGGCGTCGCTTGCAATGTGATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATGCTAGTTGACAGAGCAGTTCATTCTGCTGTTCGTCGGTTTTTGCCATCTAATGCCGCCATTTATGAGCATGAGAGTCCTGCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCTGTTGCAATGCGTGACATCACAAAATCTGCTTCCGACGATGGCCGTTCTGGATGGGACGATGTGGGTGGCCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAATTTCCAAAAACTTTTGCCCAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCATTACGATTCATATCAGTGAAAGGGCCTGAGCTATTAAACAAGTACATTGGAGCTTCTGAACAAGCTGTCAGGGATATATTCTCTAAAGCAGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAGTTTGATTCTATTGCCCCTAAGAGAGGGCATGACAATACTGGAGTAACAGATCGTGTTGTTAATCAATTTCTAACTGAGTTAGACGGTGTTGAGATTTTAACTGGTGTGTTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCACTGTTGAGACCTGGTAGGTTAGATCGACTTCTATTCTGCGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCCCTAGCTAATTTGACTAAGGGATTCAGCGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAATGTGGATGCCTCTGGGCCAGAAAAGATACTGGTTATTACTGATGCACTTCTGAAGTTCACTGCATCCAAGGCTAGACCATCTGTCTCCGAAGAAGAGAAAAGAAGACTCTACAATATTTATCACCAGTTCCTAGATTCAAAGAGATCCTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCTTGA 3384 0.4291 MELEVKVVGGIDNCFVSLPLPLIQTLHSTRSAPLPEIVALELRSLTNPSQSHTWFVAWSGATSASSAIEVSQRFAECVLLPDHARVQVRAASNVPHASLVTIEPHTEDDWEILELNSDQAEAAILNQVRIVHEGMRFPLWLHGHTVITFHVASVFPKKAVVQLMPGTEVAVAPKRRQRILDSAGDSHLDSCAKEHTAKMLLRIQDSDGLCRTSTHVKGVELHIGLTSVAFVHPETAKHFSFNMLQLVSIVPRVSKENVKISRTNTMKVKGGSAVNEVENGNTDKKEYQQTIVHLLISDSVAEGHVMIAKSLRLYLRASLHSWVYLKVCDVILEKNIPSISLYPCQFKLSRQENAVEKNGPEVFNGHKNHIDEKLLSKASSGVFMDTIDWSIHNEVVAALSDESNYKAEEEVANQSQNQKGLQSLVRLWYIAQLEAITSITGMEVNSLVMGSKTLLHFELSCYKLGSNGKVQLAYNSSENSGKAAGMLFLLTFGEENLHHRKPTAYEVALGGSLNNINIGDLKLFERMKSGDPMSIHSIEERASDVHISSNVSFLGWMGKTASDVINRMLVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTMLARTVAKSLENHEDILAHIIFVSCSKLALEKVQIIRKELSNHVTEALNHAPSIVIFDDLDSIISTPDSEGSQPSMSVTGLTDFLVDIMDEYGEKRQKSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRRLQCDDDILLDVAVKCDGYDGYDLEMLVDRAVHSAVRRFLPSNAAIYEHESPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAALANLTKGFSGADLQALLSDAQLAAVHDVLDNVDASGPEKILVITDALLKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSSRDAKGKRATLA 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2043g00030 1127 FunFam Nuclear valosin-containing protein-like 836 1014 - -
Gabi2043g00030 1127 SUPERFAMILY Cdc48 domain 2-like 95 173 IPR029067 -
Gabi2043g00030 1127 SMART AAA_5 874 1010 IPR003593 GO:0016887
Gabi2043g00030 1127 SMART AAA_5 587 739 IPR003593 GO:0016887
Gabi2043g00030 1127 Gene3D - 739 818 - -
Gabi2043g00030 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 818 IPR027417 -
Gabi2043g00030 1127 Pfam ATPase family associated with various cellular activities (AAA) 591 736 IPR003959 GO:0005524|GO:0016887
Gabi2043g00030 1127 Pfam ATPase family associated with various cellular activities (AAA) 878 1005 IPR003959 GO:0005524|GO:0016887
Gabi2043g00030 1127 SUPERFAMILY ADC-like 10 90 IPR009010 -
Gabi2043g00030 1127 FunFam Peroxisome biogenesis factor 1 95 174 - -
Gabi2043g00030 1127 Pfam Peroxisome biogenesis factor 1, N-terminal 100 173 IPR015342 GO:0005524|GO:0005777|GO:0007031
Gabi2043g00030 1127 Gene3D - 95 174 - -
Gabi2043g00030 1127 Gene3D - 550 738 IPR027417 -
Gabi2043g00030 1127 PANTHER AAA-FAMILY ATPASE 236 1106 - -
Gabi2043g00030 1127 FunFam Peroxisome biogenesis protein 1 739 819 - -
Gabi2043g00030 1127 Gene3D - 839 1101 IPR027417 -
Gabi2043g00030 1127 Gene3D - 1009 1088 - -
Gabi2043g00030 1127 FunFam Peroxisome biogenesis protein 1 544 738 - -
Gabi2043g00030 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1103 IPR027417 -
Gabi2043g00030 1127 ProSitePatterns AAA-protein family signature. 978 996 IPR003960 GO:0005524|GO:0016887
Gabi2043g00030 1127 Pfam AAA+ lid domain 1030 1068 IPR041569 -
Gabi2043g00030 1127 CDD RecA-like_PEX1_r2 849 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2043g00030 Gabi-Chr2043 193007 218098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2043g00030 588 794 Calmodulin-binding Proteins AT3G56690 30.288 1.01e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2043g00030 K13338 - gmx:100803882 1921.75