Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2043g00028 ATGGAGTTAGAGGTAAAAGTAGTTGGAGGCATAGACAACTGTTTCGTATCCCTTCCTCTTCCTCTAATCCAAACTCTACACTCCACACGATCAGCTCCTCTTCCTGAAATCGTTGCTCTCGAGCTTCGCTCTCTCACTAACCCCTCACAGTCACACACATGGTTCGTCGCTTGGTCCGGAGCCACTTCTGCTTCTTCCGCCATAGAGGTTTCTCAACGATTTGCGGAATGCGTTTTGTTACCGGATCATGCTAGAGTTCAAGTGAGAGCTGCTTCTAATGTGCCACATGCTTCTCTGGTCACGATAGAGCCTCACACGGAGGATGACTGGGAAATCTTGGAGCTCAATTCTGATCAAGCGGAGGCTGCAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATCACATTCCATGTGGCTTCCGTTTTTCCGAAGAAAGCGGTGGCAGTACAACTCATGCCAGGCACTGAAGTTGCTGTTGCTCCAAAAAGACGCCAAAGAATTTTGGATTCAGCTGGAGATTCACATCTAGACTCCTGTGCTAAAGAGCATACTGCAAAGATGCTGCTACGTATACAAGATTCAGATGGGTTATGTCGTACCAGTACTCATGTCAAAGTGCCAAGAGTGTCCAAGGAGAATGTTAAAATTTCCAGAACCAATACTATGAAAGTCAAAGGCGGGTCAGCTGTTAATGAAGTTGAGAATGGAAATACTGACAAGAAAGAATATCAACAGACAATTGTTCATCTATTGATTTCAGACTCTGTGGCTGAGGGACATGTAATGATAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGTATGTGATGTTATTTTGGAAAAAAATATTCCTTCGATCTCTCTTTATCCTTGCCAATTCAAACTGTCAAGGCAGGAGAATGCTGTTGAGAAAAATGGTCCAGAAGTTTTCAATGGCCACAAGAATCACATCGATGAAAAATTGCTTTCAAAAGCTTCTTCAGGTGTCTTTATGGATACTATAGATTGGTCCATCCACAATGAAGTTGTTGCAGCTCTCTCAGATGAATCCAATTACAAGGCAGAGGAAGAGGTTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGAGTCTTGTACGATTATGGTATATAGCCCAACTTGAGGCAATCACTTCCATTACGGGTATGGAGGTAAATTCATTGGTTATGGGTAGTAAAACCTTGCTTCATTTTGAATTAAGCTGTTACAAGCTTGGGAGCAATGGGAAGGTTCAGCTAGCTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCGGGAATGTTATTTTTATTGACCTTCGGTGAAGAAAATCTGCATCACAGGAAACCTACTGCATATGAAGTTGCTCTTGGCGGAAGTCTCAATAACATCAATATTGGGGATCTGAAGCTTTTTGAAAGGATGAAATCGGGTGATCCCATGTCTATTCATTCTATAGAAGAGAGAGCCTCTGACGTCCACATTAGTTCAAATGTATCTTTCCTTGGTTGGATGGGGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCGGCATCTGGTTTGTGGTTTGGCTCATACAACTTGCCACTCCCTGGGCATGTTCTAATATATGGACCTCCAGGCTCTGGGAAAACTATGTTGGCAAGGACTGTGGCAAAATCCCTTGAGAATCATGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCAAATTATTCGCAAAGAACTTTCAAACCATGTCACTGAAGCTTTAAATCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCCCTGACTCCGAAGGATCTCAGCCTTCAATGTCTGTTACTGGACTAACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAAATCATGTGGATTCGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCCGCTCCTGCAGCTTCAGAGCGCAGGGCCATGTTGAAGCATGAAATACAAAGGCGTCGCTTGCAATGTGATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATGCTAGTTGACAGAGCAGTTCATTCTGCTGTTCGTCGGTTTTTGCCATCTAATGCCGCCATTTATGAGCATGAGAGTCCTGCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCTGTTGCAATGCGTGACATCACAAAATCTGCTTCCGACGATGGCCGTTCTGGATGGGACGATGTGGGTGGCCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAATTTCCAAAAACTTTTGCCCAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCATTACGATTCATATCAGTGAAAGGGCCTGAGCTATTAAACAAGTACATTGGAGCTTCTGAACAAGCTGTCAGGGATATATTCTCTAAAGCAGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAGTTTGATTCTATTGCCCCTAAGAGAGGGCATGACAATACTGGAGTAACAGATCGTGTTGTTAATCAATTTCTAACTGAGTTAGACGGTGTTGAGATTTTAACTGGTGTGTTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCACTGTTGAGACCTGGTAGGTTAGATCGACTTCTATTCTGCGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCCCTAGCTAATTTGACTAAGGGATTCAGCGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAATGTGGATGCCTCTGGGCCAGAAAAGATACTGGTTATTACTGATGCACTTCTGAAGTTCACTGCATCCAAGGCTAGACCATCTGTCTCCGAAGAAGAGAAAAGAAGACTCTACAATATTTATCACCAGTTCCTAGATTCAAAGAGATCCGTTGCTGCTCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCTTGA 3303 0.4305 MELEVKVVGGIDNCFVSLPLPLIQTLHSTRSAPLPEIVALELRSLTNPSQSHTWFVAWSGATSASSAIEVSQRFAECVLLPDHARVQVRAASNVPHASLVTIEPHTEDDWEILELNSDQAEAAILNQVRIVHEGMRFPLWLHGHTVITFHVASVFPKKAVAVQLMPGTEVAVAPKRRQRILDSAGDSHLDSCAKEHTAKMLLRIQDSDGLCRTSTHVKVPRVSKENVKISRTNTMKVKGGSAVNEVENGNTDKKEYQQTIVHLLISDSVAEGHVMIAKSLRLYLRASLHSWVYLKVCDVILEKNIPSISLYPCQFKLSRQENAVEKNGPEVFNGHKNHIDEKLLSKASSGVFMDTIDWSIHNEVVAALSDESNYKAEEEVANQSQNQKGLQSLVRLWYIAQLEAITSITGMEVNSLVMGSKTLLHFELSCYKLGSNGKVQLAYNSSENSGKAAGMLFLLTFGEENLHHRKPTAYEVALGGSLNNINIGDLKLFERMKSGDPMSIHSIEERASDVHISSNVSFLGWMGKTASDVINRMLVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTMLARTVAKSLENHEDILAHIIFVSCSKLALEKVQIIRKELSNHVTEALNHAPSIVIFDDLDSIISTPDSEGSQPSMSVTGLTDFLVDIMDEYGEKRQKSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRRLQCDDDILLDVAVKCDGYDGYDLEMLVDRAVHSAVRRFLPSNAAIYEHESPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAALANLTKGFSGADLQALLSDAQLAAVHDVLDNVDASGPEKILVITDALLKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDAKGKRATLA 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2043g00028 1100 Gene3D - 519 707 IPR027417 -
Gabi2043g00028 1100 SUPERFAMILY ADC-like 10 90 IPR009010 -
Gabi2043g00028 1100 PANTHER AAA-FAMILY ATPASE 214 1072 - -
Gabi2043g00028 1100 Gene3D - 978 1057 - -
Gabi2043g00028 1100 FunFam Nuclear valosin-containing protein-like 805 983 - -
Gabi2043g00028 1100 Pfam AAA+ lid domain 999 1037 IPR041569 -
Gabi2043g00028 1100 Pfam Peroxisome biogenesis factor 1, N-terminal 100 174 IPR015342 GO:0005524|GO:0005777|GO:0007031
Gabi2043g00028 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 809 1072 IPR027417 -
Gabi2043g00028 1100 ProSitePatterns AAA-protein family signature. 947 965 IPR003960 GO:0005524|GO:0016887
Gabi2043g00028 1100 Gene3D - 808 1070 IPR027417 -
Gabi2043g00028 1100 Pfam ATPase family associated with various cellular activities (AAA) 560 705 IPR003959 GO:0005524|GO:0016887
Gabi2043g00028 1100 Pfam ATPase family associated with various cellular activities (AAA) 847 974 IPR003959 GO:0005524|GO:0016887
Gabi2043g00028 1100 Gene3D - 708 787 - -
Gabi2043g00028 1100 FunFam Peroxisome biogenesis factor 1 95 175 - -
Gabi2043g00028 1100 CDD RecA-like_PEX1_r2 818 975 - -
Gabi2043g00028 1100 SMART AAA_5 843 979 IPR003593 GO:0016887
Gabi2043g00028 1100 SMART AAA_5 556 708 IPR003593 GO:0016887
Gabi2043g00028 1100 FunFam Peroxisome biogenesis protein 1 513 707 - -
Gabi2043g00028 1100 Gene3D - 95 175 - -
Gabi2043g00028 1100 SUPERFAMILY Cdc48 domain 2-like 95 174 IPR029067 -
Gabi2043g00028 1100 FunFam Peroxisome biogenesis protein 1 708 788 - -
Gabi2043g00028 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 541 787 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2043g00028 Gabi-Chr2043 193007 218098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2043g00028 557 763 Calmodulin-binding Proteins AT3G56690 30.288 9.32e-15 77.4