Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2043g00026 ATGGAGTTAGAGGTAAAAGTAGTTGGAGGCATAGACAACTGTTTCGTATCCCTTCCTCTTCCTCTAATCCAAACTCTACACTCCACACGATCAGCTCCTCTTCCTGAAATCGTTGCTCTCGAGCTTCGCTCTCTCACTAACCCCTCACAGTCACACACATGGTTCGTCGCTTGGTCCGGAGCCACTTCTGCTTCTTCCGCCATAGAGGTTTCTCAACGATTTGCGGAATGCGTTTTGTTACCGGATCATGCTAGAGTTCAAGTGAGAGCTGCTTCTAATGTGCCACATGCTTCTCTGGTCACGATAGAGCCTCACACGGAGGATGACTGGGAAATCTTGGAGCTCAATTCTGATCAAGCGGAGGCTGCAATCCTCAACCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATCACATTCCATGTGGCTTCCGTTTTTCCGAAGAAAGCGGTGGCAGTACAACTCATGCCAGGCACTGAAGTTGCTGTTGCTCCAAAAAGACGCCAAAGAATTTTGGATTCAGCTGGAGATTCACATCTAGACTCCTGTGCTAAAGAGCATACTGCAAAGATGCTGCTACGTATACAAGATTCAGATGGGTTATGTCGTACCAGTACTCATGTCAAAGGTGTTGAGCTTCATATAGGGCTTACATCTGTTGCTTTTGTTCACCCAGAAACTGCAAAACACTTCTCGTTTAACATGCTTCAGTTGGTTTCCATAGTGCCAAGAGTGTCCAAGGAGAATGTTAAAATTTCCAGAACCAATACTATGAAAGTCAAAGGCGGGTCAGCTGTTAATGAAGTTGAGAATGGAAATACTGACAAGAAAGAATATCAACAGACAATTGTTCATCTATTGATTTCAGACTCTGTGGCTGAGGGACATGTAATGATAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGTATGTGATGTTATTTTGGAAAAAAATATTCCTTCGATCTCTCTTTATCCTTGCCAATTCAAACTGTCAAGGCAGGAGAATGCTGTTGAGAAAAATGGTCCAGAAGTTTTCAATGGCCACAAGAATCACATCGATGAAAAATTGCTTTCAAAAGCTTCTTCAGGTGTCTTTATGGATACTATAGATTGGTCCATCCACAATGAAGTTGTTGCAGCTCTCTCAGATGAATCCAATTACAAGGCAGAGGAAGAGGTTGCAAATCAGTCTCAGAATCAAAAGGGATTACAGAGTCTTGTACGATTATGGTATATAGCCCAACTTGAGGCAATCACTTCCATTACGGGTATGGAGGTAAATTCATTGGTTATGGGTAGTAAAACCTTGCTTCATTTTGAATTAAGCTGTTACAAGCTTGGGAGCAATGGGAAGGTTCAGCTAGCTTATAATTCTTCAGAGAACAGTGGCAAGGCAGCGGGAATGTTATTTTTATTGACCTTCGGTGAAGAAAATCTGCATCACAGGAAACCTACTGCATATGAAGTTGCTCTTGGCGGAAGTCTCAATAACATCAATATTGGGGATCTGAAGCTTTTTGAAAGGATGAAATCGGGTGATCCCATGTCTATTCATTCTATAGAAGAGAGAGCCTCTGACGTCCACATTAGTTCAAATGTATCTTTCCTTGGTTGGATGGGGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCGGCATCTGGTTTGTGGTTTGGCTCATACAACTTGCCACTCCCTGGGCATGTTCTAATATATGGACCTCCAGGCTCTGGGAAAACTATGTTGGCAAGGACTGTGGCAAAATCCCTTGAGAATCATGAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCAAATTATTCGCAAAGAACTTTCAAACCATGTCACTGAAGCTTTAAATCATGCACCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCCCTGACTCCGAAGGATCTCAGCCTTCAATGTCTGTTACTGGACTAACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAAATCATGTGGATTCGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCCGCTCCTGCAGCTTCAGAGCGCAGGGCCATGTTGAAGCATGAAATACAAAGGCGTCGCTTGCAATGTGATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATGCTAGTTGACAGAGCAGTTCATTCTGCTGTTCGTCGGTTTTTGCCATCTAATGCCGCCATTTATGAGCATGAGAGTCCTGCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCTGTTGCAATGCGTGACATCACAAAATCTGCTTCCGACGATGGCCGTTCTGGATGGGACGATGTGGGTGGCCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAATTTCCAAAAACTTTTGCCCAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCATTACGATTCATATCAGTGAAAGGGCCTGAGCTATTAAACAAGTACATTGGAGCTTCTGAACAAGCTGTCAGGGATATATTCTCTAAAGCAGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAGTTTGATTCTATTGCCCCTAAGAGAGGGCATGACAATACTGGAGTAACAGATCGTGTTGTTAATCAATTTCTAACTGAGTTAGACGGTGTTGAGATTTTAACTGGTGTGTTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCACTGTTGAGACCTGGTAGGTTAGATCGACTTCTATTCTGCGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCCCTAGCTAATTTGACTAAGGGATTCAGCGGGGCTGATCTCCAAGCTCTTCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAATGTGGATGCCTCTGGGCCAGAAAAGATACTGGTTATTACTGATGCACTTCTGAAGTTCACTGCATCCAAGGCTAGACCATCTGTCTCCGAAGAAGAGAAAAGAAGACTCTACAATATTTATCACCAGTTCCTAGATTCAAAGAGATCCGTTGCTGCTCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCTTGA 3399 0.4298 MELEVKVVGGIDNCFVSLPLPLIQTLHSTRSAPLPEIVALELRSLTNPSQSHTWFVAWSGATSASSAIEVSQRFAECVLLPDHARVQVRAASNVPHASLVTIEPHTEDDWEILELNSDQAEAAILNQVRIVHEGMRFPLWLHGHTVITFHVASVFPKKAVAVQLMPGTEVAVAPKRRQRILDSAGDSHLDSCAKEHTAKMLLRIQDSDGLCRTSTHVKGVELHIGLTSVAFVHPETAKHFSFNMLQLVSIVPRVSKENVKISRTNTMKVKGGSAVNEVENGNTDKKEYQQTIVHLLISDSVAEGHVMIAKSLRLYLRASLHSWVYLKVCDVILEKNIPSISLYPCQFKLSRQENAVEKNGPEVFNGHKNHIDEKLLSKASSGVFMDTIDWSIHNEVVAALSDESNYKAEEEVANQSQNQKGLQSLVRLWYIAQLEAITSITGMEVNSLVMGSKTLLHFELSCYKLGSNGKVQLAYNSSENSGKAAGMLFLLTFGEENLHHRKPTAYEVALGGSLNNINIGDLKLFERMKSGDPMSIHSIEERASDVHISSNVSFLGWMGKTASDVINRMLVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTMLARTVAKSLENHEDILAHIIFVSCSKLALEKVQIIRKELSNHVTEALNHAPSIVIFDDLDSIISTPDSEGSQPSMSVTGLTDFLVDIMDEYGEKRQKSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRRLQCDDDILLDVAVKCDGYDGYDLEMLVDRAVHSAVRRFLPSNAAIYEHESPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAALANLTKGFSGADLQALLSDAQLAAVHDVLDNVDASGPEKILVITDALLKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDAKGKRATLA 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2043g00026 1132 Gene3D - 740 819 - -
Gabi2043g00026 1132 SMART AAA_5 875 1011 IPR003593 GO:0016887
Gabi2043g00026 1132 SMART AAA_5 588 740 IPR003593 GO:0016887
Gabi2043g00026 1132 Gene3D - 1010 1089 - -
Gabi2043g00026 1132 Pfam ATPase family associated with various cellular activities (AAA) 879 1006 IPR003959 GO:0005524|GO:0016887
Gabi2043g00026 1132 Pfam ATPase family associated with various cellular activities (AAA) 592 737 IPR003959 GO:0005524|GO:0016887
Gabi2043g00026 1132 FunFam Peroxisome biogenesis factor 1 95 175 - -
Gabi2043g00026 1132 CDD RecA-like_PEX1_r2 850 1007 - -
Gabi2043g00026 1132 Gene3D - 551 739 IPR027417 -
Gabi2043g00026 1132 Pfam Peroxisome biogenesis factor 1, N-terminal 100 174 IPR015342 GO:0005524|GO:0005777|GO:0007031
Gabi2043g00026 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 819 IPR027417 -
Gabi2043g00026 1132 SUPERFAMILY ADC-like 10 90 IPR009010 -
Gabi2043g00026 1132 FunFam Nuclear valosin-containing protein-like 837 1015 - -
Gabi2043g00026 1132 Gene3D - 840 1102 IPR027417 -
Gabi2043g00026 1132 PANTHER AAA-FAMILY ATPASE 236 1104 - -
Gabi2043g00026 1132 SUPERFAMILY Cdc48 domain 2-like 95 174 IPR029067 -
Gabi2043g00026 1132 FunFam Peroxisome biogenesis protein 1 545 739 - -
Gabi2043g00026 1132 Pfam AAA+ lid domain 1031 1069 IPR041569 -
Gabi2043g00026 1132 Gene3D - 95 175 - -
Gabi2043g00026 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1104 IPR027417 -
Gabi2043g00026 1132 ProSitePatterns AAA-protein family signature. 979 997 IPR003960 GO:0005524|GO:0016887
Gabi2043g00026 1132 FunFam Peroxisome biogenesis protein 1 740 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2043g00026 Gabi-Chr2043 193007 218098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2043g00026 589 795 Calmodulin-binding Proteins AT3G56690 30.288 9.87e-15 77.4