LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2043g00023	ATGTCTTCTACGAGATCAGGTCCAACAGGAGATAATCGAGCCACATTCCAACCGCTTCCCAATCCTACAACAAATTTGCAAGGGGATGAGATCAAGCCACTATCAGGAAAACCATACTATCATGTGGTTCTTTCCAAAACACATCTTAGTACCCGTTATGTGATGGGGCCATCAAACAACTTATTCTCAAAACTTCCTTCTCATGCGGTCCCTGCTGTTCTCAACTATCGGGGCAAGAGCTGGGACATGATGTATAATGGACAAAACACACCTCCCAAGAGGTTTACTTCTGATGGCTGGAGAAATTTTGCTGATGATAATTGTTTGAAGGTTGGAGATGCATGCATTTTTGAGCTCATGGAAAACAGTAAAGAGAAAATCATCTTTGAAGTTCAAATTCTTAGAGGTGACATACCATCCAAATTTCTTGAAAATGAAATGATCTTTGGTCAGAATGCAGAAGTGCCAATTGTCATTGACTAG	483	0.4079	MSSTRSGPTGDNRATFQPLPNPTTNLQGDEIKPLSGKPYYHVVLSKTHLSTRYVMGPSNNLFSKLPSHAVPAVLNYRGKSWDMMYNGQNTPPKRFTSDGWRNFADDNCLKVGDACIFELMENSKEKIIFEVQILRGDIPSKFLENEMIFGQNAEVPIVID	160

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2043g00023	160	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	36	139	IPR044837	-
	Gabi2043g00023	160	Pfam	B3 DNA binding domain	73	129	IPR003340	GO:0003677
	Gabi2043g00023	160	ProSiteProfiles	B3 DNA-binding domain profile.	73	137	IPR003340	GO:0003677
	Gabi2043g00023	160	MobiDBLite	consensus disorder prediction	1	27	-	-
	Gabi2043g00023	160	SMART	B3_2	40	137	IPR003340	GO:0003677
	Gabi2043g00023	160	SUPERFAMILY	DNA-binding pseudobarrel domain	36	133	IPR015300	-
	Gabi2043g00023	160	Gene3D	-	27	137	IPR015300	-
	Gabi2043g00023	160	CDD	B3_DNA	38	135	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2043g00023	Gabi-Chr2043	181009	183639	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2043g00023	43	137	REM Transcription Factor Family	AT4G33280	28.421	1.67e-06	44.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Gabi2043g00023		B3	5.4e-12	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2043g00023	-		-	ccaj:109817502	195.667