Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2043g00021 ATGTTGGGTGGTTTATACGGAGACCTACCTCCGCCCTCTTCCGCCGAAGAAGACAAACCAACCACCAATGTCTGGTCAAGCAGCACCAAGATGGCCCCCGCCACCCTCCGCAAACCTGCCTCTCTTTTCGCGCCTCCTCATACCGTTTTGAGATCCCAGTCCAAACCTAAAATCTCCAATTCTTCTTCCGTCCAGAAAACAGTTGGATCCGGATCAGTAACGCCGGTGCCGGTGGCTTCGGTGGCGCCGGTACCGGATGAAGTTATGCAACCGGCTCTAGTCGGAGTCCAATCGACGGTGATGGAGGAATATGACCCGGCTAGGCCGAACGACTACGAGGAGTACCGGAGGGAGAGGAAGAGGAAGGCCAGGGAGGCGGAGATGATGAGGGAGCTCGAGAGGCGGCGGCAGGAGGAGGAGGAAGAGGAGAGGGAGAGGGAAAGAGAAAAGAGAGAGAAGGATTTGGGTGGTGGCGGCGGTGGCGATTCTTCTTCGAGGTTGAATATTTCCGGTGAGGAAGCGTGGAAGAGGCGGGCCGCAATGAGTGGCGGCGGGGGTGGGGGAGCGGGTGCAGGTGCGGTGCCACCGAGGTCGCCGTCTCCGCCGAGTAATGTGGATGGTTTTAGTATTGGGAAGTCGGATACGGGTGGGTTAGGGGTTGGTGCGGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCAAAGATGGGATGGAAGGAAGGGCAAGGACTTGGGAAACAGGAGCAAGGGATTACCACTCCTTTGATGGCCAAGAAAACTGATAGACGAGCTGGGGTTATTGTCAATGCTAGTGACAATAAACAGGATAAGAAAGTGGTGAAGAGTGTGAACTTCAATGGGATTCCTACAAGGGTCCTCTTGCTTAGGAATATGGTGGGTCCTGGTGAGGTAGATGACGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTACGGGACAGTAACTCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCCGTTGAGGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACTACTAAAGCGCTTATTGACCTTGATGGTCGGTACTTTGGGGGCAGAGTGGTGCGTGCCACTTTTTATGATGAGGAGAAGTTTAGCAAGAATGAGTTGGCTCCAATGCCAGGAGAAATTCCTGGCTTTACGTAA 1191 0.5332 MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPASLFAPPHTVLRSQSKPKISNSSSVQKTVGSGSVTPVPVASVAPVPDEVMQPALVGVQSTVMEEYDPARPNDYEEYRRERKRKAREAEMMRELERRRQEEEEEEREREREKREKDLGGGGGGDSSSRLNISGEEAWKRRAAMSGGGGGGAGAGAVPPRSPSPPSNVDGFSIGKSDTGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNKQDKKVVKSVNFNGIPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVEEAVRIFVQFERSEETTKALIDLDGRYFGGRVVRATFYDEEKFSKNELAPMPGEIPGFT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2043g00021 396 MobiDBLite consensus disorder prediction 16 34 - -
Gabi2043g00021 396 Coils Coil 112 154 - -
Gabi2043g00021 396 PANTHER SPLICING FACTOR 45 SPF45 1 387 IPR040052 GO:0045292
Gabi2043g00021 396 SMART rrm2_1 292 373 IPR003954 GO:0003676
Gabi2043g00021 396 Gene3D - 287 385 IPR012677 -
Gabi2043g00021 396 MobiDBLite consensus disorder prediction 106 157 - -
Gabi2043g00021 396 SUPERFAMILY RNA-binding domain, RBD 293 380 IPR035979 GO:0003676
Gabi2043g00021 396 PIRSF SPF45 3 392 IPR040052 GO:0045292
Gabi2043g00021 396 ProSiteProfiles G-patch domain profile. 225 271 IPR000467 GO:0003676
Gabi2043g00021 396 SMART G-patch_5 223 269 IPR000467 GO:0003676
Gabi2043g00021 396 MobiDBLite consensus disorder prediction 52 74 - -
Gabi2043g00021 396 Pfam G-patch domain 228 267 IPR000467 GO:0003676
Gabi2043g00021 396 CDD RRM_UHM_SPF45 289 385 IPR034653 -
Gabi2043g00021 396 MobiDBLite consensus disorder prediction 1 75 - -
Gabi2043g00021 396 MobiDBLite consensus disorder prediction 103 218 - -
Gabi2043g00021 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 377 IPR000504 GO:0003723
Gabi2043g00021 396 FunFam Putative splicing factor 45 290 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2043g00021 Gabi-Chr2043 174957 180186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2043g00021 231 279 C2H2 Transcription Factor Family AT5G26610 48.214 7.24e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2043g00021 K12840 - zju:107418861 493.426