Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2042g00026 ATGGAGGGACCTGGAATGGAAGAGAATATTCCTGAGAATAATTCCAAGTCTGAGGCGCATTTGACTTCTGCTGCTGCTTTTGTGGAGGGTGGAATACAGGATGCTTGTGACGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGATAGTGATCCTTCCACGGTGACAAGTTGCAAGCACGAGTTTCATCTTCAATGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAATCTATCAGTCTCAAAGATCCAACGAGCCAGGAATTGCTTGAGGCAGTGGAAAGAGAGAGGAACTTTAGGTTCAACCCATCAAGAAATGCCACAATATTTCATCACCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCCGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCAGCTGCAGCAATGGGGCGAGCACGTCACATTGCTAGAAGGGAAGGCCAGAGGAACAGGTCATCAGCTCAAGGTCGCCCACATTTTCTGGTATTTTCGACTCATCCTAATTCACCTCCGATGGCTCCTGCTTCTTCCTCTCCAACTCAGAGGGGGGATGGTGAACCAACTCCTGCAATTGCTGTTGCCACTGTATCTTCAACGCCTGCAACTGGAGAAGAATCACCACAGCTGACTTTAGTTCCTCCCATTCAAGCTGACCAGGTGTCTGCTTCTGGATCTGGGTCTATTGCCCTAGCTACTGATCATCAGGGATCATCTTACAACAATAGGAGATCTCCCAATCAGTCTTCTCCGAGTAGTCAAGACAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGATTCTCTGAAATCTAAACTAAATGCTGTGTCAACTAGATACAAAGAGTCAATTTCCAAGAGCACAAAAGGGTGGAAGGAGAGATGGTTCTCTCGTAACACTTCTATGTCTGATCTTGGTTCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCTCGAATGATGGAACGCCTGGAGACCAAGGACAGTGATAGAAACAATAGCAATTCTGCTTCAAGTAATGCAGAGGATGATTCAGTTCAGGGATCAAATGATCAGCATTTAACGGACACTGAAGGGAACAGTCTTTTAAGAGACAATAACACCAAAACATCCTGTACTGCAGGTTCTAGCTCAAATTAA 1191 0.4584 MEGPGMEENIPENNSKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASSSPTQRGDGEPTPAIAVATVSSTPATGEESPQLTLVPPIQADQVSASGSGSIALATDHQGSSYNNRRSPNQSSPSSQDRAGPSEFQSFSDSLKSKLNAVSTRYKESISKSTKGWKERWFSRNTSMSDLGSEVRREVNAGIATVSRMMERLETKDSDRNNSNSASSNAEDDSVQGSNDQHLTDTEGNSLLRDNNTKTSCTAGSSSN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2042g00026 396 MobiDBLite consensus disorder prediction 244 281 - -
Gabi2042g00026 396 MobiDBLite consensus disorder prediction 156 203 - -
Gabi2042g00026 396 MobiDBLite consensus disorder prediction 184 199 - -
Gabi2042g00026 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 89 IPR013083 -
Gabi2042g00026 396 MobiDBLite consensus disorder prediction 348 396 - -
Gabi2042g00026 396 ProSiteProfiles Zinc finger RING-type profile. 40 80 IPR001841 -
Gabi2042g00026 396 Pfam Ring finger domain 39 80 IPR001841 -
Gabi2042g00026 396 SUPERFAMILY RING/U-box 33 88 - -
Gabi2042g00026 396 SMART ring_2 40 80 IPR001841 -
Gabi2042g00026 396 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 20 89 - -
Gabi2042g00026 396 FunFam E3 ubiquitin-protein ligase RHF2A 11 114 - -
Gabi2042g00026 396 CDD RING-H2_RHF2A 27 89 - -
Gabi2042g00026 396 MobiDBLite consensus disorder prediction 338 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2042g00026 Gabi-Chr2042 229337 234582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2042g00026 4 88 C3H Transcription Factor Family AT4G23450 36.047 2.73e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2042g00026 K19043 - gmx:100780275 657.136