Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2042g00023 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTCCTCACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTTAACATGGGAGCTTCACTTCAAACACATCCCCCTCAAGACCCTCAGAAACAGCACCTAAGTGTTCAAGAGCCAAGTATCAAGGAACTGGGATCATCTTCAAAATGCAAAGCATTACCGGTAGACCATGAGCAACCTAGGGTTCCTCCAATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAAAGAATTAAGGCAAGTAATCCAGATATCAGCCACAGGGAAGCATTCAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGAAACAAACAAGCAAAGTTGGACCAGGGTGACACTACTCAAAAGTCTAACGGAATCTACTGA 531 0.4501 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSFLTIVTVRCGHCANLLSVNMGASLQTHPPQDPQKQHLSVQEPSIKELGSSSKCKALPVDHEQPRVPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDTTQKSNGIY 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2042g00023 176 CDD HMG-box_SF 107 143 - -
Gabi2042g00023 176 PANTHER PROTEIN YABBY 6-RELATED 1 163 IPR006780 GO:0007275
Gabi2042g00023 176 SUPERFAMILY HMG-box 97 146 IPR036910 -
Gabi2042g00023 176 MobiDBLite consensus disorder prediction 89 108 - -
Gabi2042g00023 176 Pfam YABBY protein 7 153 IPR006780 GO:0007275
Gabi2042g00023 176 Gene3D High mobility group box domain 90 149 IPR036910 -
Gabi2042g00023 176 FunFam Axial regulator YABBY 98 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2042g00023 Gabi-Chr2042 163344 170609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2042g00023 1 176 C2C2-YABBY Transcription Factor Family AT1G08465 67.204 1.49e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gabi2042g00023 YABBY 3.3e-66 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2042g00023 K25796 - gmx:100785458 322.013