Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2042g00017 ATGGATCCCTTGATCCGCAAGCTCCGGCGCCAGCTCCTCGCATGGCTTCACCGATCTCGTTCCGGTCAGGTATTTTTTGTGAGGAGAATTTCGTACAAGGATGTTAGAAAGGCGACAGATGGTTTCCAAAGAATCGTTTATAGCGATTCTGAGGTTTCTGCATATGCTGCGAAATTCGGAGAGGGTGGTGGTGTTTGCTTGGTGAAAGAAGTAAAAGATTTTGATCTAAGCAATGGCAATTTCCATAGACAAGTGCAATTTTTGGGGCGCTTGCATCATCGTCACCTTCTCTCACTCAAAGGGTTTTCTGGGGGACATAATCACAAGAGACTGCTCATATTTGACAACATAGAAAATGGAAGCTTAAAGGAGCATCTCAATGACCCTTTAAAGACTCCCTTAAATTGGAGGACGAGGTTACAGATTGCTAATGGTGTTGTGGCTGCACTGGAATACTTGTTTCGCTTCAGTGAACCACCAGTATGTAATGTCTCTATCAGCTCAAGCAATATCATGTTAGATGAGAACTTCACAGCTAAACTATCCGACTTTGGCCTTTTTACTTCTGGTGGAAATTCTGTTATGATGCCATATTCAGAAGATTGCATGAGGCAGAAAGGTTGCAAGATTATATTCCAACTTGGAGTGGTCATACTGGAATTGGTCACCGGTCAGTCTTCAGAGATGGAAGGATCTGATTTGATTGAATGGATCCAAGAAGCCCGATTCTACAGTTCCATAGATAAGATGATAGACCCTGATCTTGGAAACAATTATGATTGTACGGAGCTTAAAAGTCTTCTAGCTGTGGCAAAATTATGTATCAAATCATGGGACAAGCCTTCGTTTACAATTCCTCAGTTATTTCGGTATGTCCAAAAGAAGATTGACATTCCCCATGACTAG 906 0.4216 MDPLIRKLRRQLLAWLHRSRSGQVFFVRRISYKDVRKATDGFQRIVYSDSEVSAYAAKFGEGGGVCLVKEVKDFDLSNGNFHRQVQFLGRLHHRHLLSLKGFSGGHNHKRLLIFDNIENGSLKEHLNDPLKTPLNWRTRLQIANGVVAALEYLFRFSEPPVCNVSISSSNIMLDENFTAKLSDFGLFTSGGNSVMMPYSEDCMRQKGCKIIFQLGVVILELVTGQSSEMEGSDLIEWIQEARFYSSIDKMIDPDLGNNYDCTELKSLLAVAKLCIKSWDKPSFTIPQLFRYVQKKIDIPHD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2042g00017 301 PANTHER OS01G0253100 PROTEIN 27 294 - -
Gabi2042g00017 301 Gene3D Phosphorylase Kinase; domain 1 12 115 - -
Gabi2042g00017 301 Gene3D Transferase(Phosphotransferase) domain 1 211 297 - -
Gabi2042g00017 301 Gene3D Transferase(Phosphotransferase) domain 1 117 207 - -
Gabi2042g00017 301 SUPERFAMILY Protein kinase-like (PK-like) 38 264 IPR011009 -
Gabi2042g00017 301 FunFam probable receptor-like protein kinase At1g49730 211 300 - -
Gabi2042g00017 301 FunFam Protein kinase superfamily protein 117 207 - -
Gabi2042g00017 301 FunFam Protein kinase superfamily protein 16 115 - -
Gabi2042g00017 301 ProSiteProfiles Protein kinase domain profile. 32 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2042g00017 301 SMART tyrkin_6 24 289 IPR020635 GO:0004713|GO:0006468
Gabi2042g00017 301 Pfam Protein tyrosine and serine/threonine kinase 67 189 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2042g00017 Gabi-Chr2042 105241 108035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2042g00017 22 300 Receptor kinase-like Gene Family AT3G19300 35.354 4.57e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Gabi2042g00017 PK_Tyr_Ser-Thr 3.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2042g00017 - - gmx:100791979 508.064