Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2042g00014 ATGTTTGGAAGAGCACCGAAGAAAAGCGACAACACCAGGTACTACGAAATCCTTGGCGTTTCGAAGAACGCTTCTCAGGATGATTTGAAGAAGGCTTACAAGAAAGCCGCCATCAAGAATCACCCTGACAAGGGCGGTGATCCTGAGAAGTTCAAAGAGCTGGCTCAAGCCTATGAGGTTCTGATGGATCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGTGGCGGTGGCCATGACCCATTTGATATCTTTCAGTCATTCTTTGGTGGAAGTCCATTTGGAGGTGGTAGCAGTAGAGCAAGGAGGCAGAGGCGGGGTGAAGATGTGGTTCACCCCCTGAAGGTCTCTCTGGAGGACCTTTACCTTGGGACATCAAAGAAGCTCTCTCTTTCACGAAATGTCTTGTGCTCAAAATGCAACGGGAAGGGGTCAAAGTCTGGGGCTTCCATGAAGTGTTCTGGTTGTCAAGGTACTGGTATGAAGGTTTCTATTAGGCACCTCGGCCCCTCTATGATTCAGCAAATGCAGCATGCTTGCAATGAATGCAAGGGTACTGGAGAGACTATCAGTGACAGAGACCGATGCACACAGTGCAAGGGAGAGAAGGTTGTCCAAGAGAAGAAAGTGCTTGAAGTTATTGTGGAGAAGGGAATGCAGAATGGACAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGCCCGATACAATCACTGGGGATATCGTCTTTGTGCTGCAGCAGAAAGAACACCCTAAGTTCAAAAGAAAGGCTGAAGACCTTTTTGTGGAGCATACCCTGTCCCTCACTGAGGCTCTGTGTGGCTTCCAGTTTGTTCTGACTCACTTGGATGGCCGGCAACTCCTTATCAAATCAAACCCTGGAGAAGTTGTTAAGCCTGATTCATTCAAGGCAATAAATGATGAGGGGATGCCAATGTACCAGAGGCCCTTCATGAAGGACAAGGAGGAGGCAGCAAGCTCAGCAAGAGGCATATGA 1029 0.483 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLMDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGSPFGGGSSRARRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETISDRDRCTQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSFKAINDEGMPMYQRPFMKDKEEAASSARGI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2042g00014 342 CDD DnaJ 14 63 IPR001623 -
Gabi2042g00014 342 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gabi2042g00014 342 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gabi2042g00014 342 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gabi2042g00014 342 FunFam dnaJ protein homolog 10 109 - -
Gabi2042g00014 342 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 330 IPR044713 GO:0006457|GO:0030544
Gabi2042g00014 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 113 271 IPR008971 GO:0006457|GO:0051082
Gabi2042g00014 342 CDD DnaJ_C 118 326 - -
Gabi2042g00014 342 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gabi2042g00014 342 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Gabi2042g00014 342 FunFam Chaperone protein dnaJ 3 214 254 - -
Gabi2042g00014 342 Pfam DnaJ domain 14 71 IPR001623 -
Gabi2042g00014 342 Gene3D - 110 259 - -
Gabi2042g00014 342 SMART dnaj_3 12 66 IPR001623 -
Gabi2042g00014 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 325 IPR008971 GO:0006457|GO:0051082
Gabi2042g00014 342 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Gabi2042g00014 342 Gene3D DnaJ domain 10 109 IPR036869 -
Gabi2042g00014 342 Gene3D - 147 213 - -
Gabi2042g00014 342 Gene3D - 261 334 - -
Gabi2042g00014 342 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Gabi2042g00014 342 FunFam DnaJ subfamily A member 2 261 332 - -
Gabi2042g00014 342 Pfam DnaJ C terminal domain 121 326 IPR002939 -
Gabi2042g00014 342 SUPERFAMILY Chaperone J-domain 8 106 IPR036869 -
Gabi2042g00014 342 FunFam DnaJ subfamily A member 2 147 213 - -
Gabi2042g00014 342 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Gabi2042g00014 342 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2042g00014 Gabi-Chr2042 94832 97186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2042g00014 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 2.08e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2042g00014 K09503 - csv:101205422 597.045