Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2040g00018 ATGAATATCGAAATTCCGAGACGAGAGTTATTCATAAACGGAGAGTGGAAAGCTCCCGTTCTGAACAAACGGATTCCCATCATTAACCCTTCCAATCAACAGATCATCGCGGCTACTAAGGAAGATGCGGAGTTTGCAGTGGCAGCTGCAAAAACTGCCTTCTCTCGTAACAAAGGCGCTGACTGGGCTTGCGCTTCTGGTTCTGTTCGTGCACGCTATCTACGCGCCATCGCTGCGAAGGTTACTGAGAAAAAATCTGAGTTAGCAAAACTTGAAGCCATTGATTGTGGAAAACCACTTGATGAAGCCGCATGGGACATGGATGATGTTGCTGGTTGCTTTGAGTTCTATGCTGATCTTGCAGAAAAATTGGATTCCAAACAAAAAGCTCCTGTGTCTCTTCCAATGGATACATTCAGGAGTTATGTTCTTAAGGAACCCATTGGGGTTGTTGGATTAATAACACCATGGAATTATCCTATGTTAATGGCTACGTGGAAGGTTGCTCCTGCTCTGGCTGCTGGTTGTGCTGCGATATTGAAGCCGTCTGAATTGGCATCTGTGACCTGTTTGGAGCTCGGTGAAATATGCAGAGAAGTGGGCCTTCCTCCAGGTGTATTAAACATTCTCACTGGATTAGGCCCTGAAGCTGGTGCTCCTTTAGCATCCCATCCTGATGTAGACAAGATTGCCTTTACTGGAAGCTCTGTAACTGGGAGCAAGATTATGACAGCTGCTGCTCAGCTGCTCAAGCCCGTTTCATTAGAGCTCGGTGGAAAAAGCCCAATCATCGTTTTTGAGGATGTTGACCTTGATAAGGCTGCTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTACATGAAAGTATAGCAACAGAATTTTTGAATAGGCTTGTGAAATGGGTCAAAAACATCAAAATTTCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGCCCTGTTGTTAGTGAAGGACAGTACGAAAAAATAATGAAGTTTATCTCGAATGCCAAGAGTGAGGGTGCAACCATTTTAACTGGTGGGTCTCGCCCAGAGCATCTAAAGAAGGGATTCTTTGTTGAACCAACCATCATAACTGATGTGACTACTTCCATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTTCTGTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCGAATGACACTGTCTATGGCTTAGGTTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGCATTACAAAGGCTTTTAAGGCTGGAATTGTATGGGTCAATTGCTCTCAACCATGCTTCACTCAGGCCCCATGGGGAGGCATTAAACGTAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAATTACTTGAGTGTGAAGCAGGTGACTCAGTATATCTCCGATGAACCGTGGGGCTGGTACCAGTCTCCTTCAAAGCTGTGA 1500 0.4473 MNIEIPRRELFINGEWKAPVLNKRIPIINPSNQQIIAATKEDAEFAVAAAKTAFSRNKGADWACASGSVRARYLRAIAAKVTEKKSELAKLEAIDCGKPLDEAAWDMDDVAGCFEFYADLAEKLDSKQKAPVSLPMDTFRSYVLKEPIGVVGLITPWNYPMLMATWKVAPALAAGCAAILKPSELASVTCLELGEICREVGLPPGVLNILTGLGPEAGAPLASHPDVDKIAFTGSSVTGSKIMTAAAQLLKPVSLELGGKSPIIVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIATEFLNRLVKWVKNIKISDPLEEGCRLGPVVSEGQYEKIMKFISNAKSEGATILTGGSRPEHLKKGFFVEPTIITDVTTSMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWVNCSQPCFTQAPWGGIKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQSPSKL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2040g00018 499 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 283 294 IPR016160 GO:0016491
Gabi2040g00018 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 263 454 IPR016163 GO:0016620
Gabi2040g00018 499 CDD ALDH_F10_BADH 27 483 - -
Gabi2040g00018 499 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 273 - -
Gabi2040g00018 499 SUPERFAMILY ALDH-like 5 482 IPR016161 GO:0016491
Gabi2040g00018 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 479 IPR016162 GO:0016491
Gabi2040g00018 499 FunFam Betaine aldehyde dehydrogenase 259 450 - -
Gabi2040g00018 499 PANTHER ALDEHYDE DEHYDROGENASE 4 498 - -
Gabi2040g00018 499 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 255 262 IPR029510 GO:0016491
Gabi2040g00018 499 Pfam Aldehyde dehydrogenase family 23 481 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2040g00018 Gabi-Chr2040 190257 194598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2040g00018 1 497 Aldehyde Dehydrogenase Gene Family AT1G74920 80.885 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2040g00018 K00130 - gmx:100170731 917.531