Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2040g00017 ATGGCTCTTTCCTCTTCAATTACAGATATTGCATCTTCCAAGGACTGCACCTATAGCCGCAAGCAAAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAGCTTGTACGATCGAGACACCGTCCACTTAATCGGCTTGGACGATGCCGCTGCTCGATTAGGGGTCGAGAGAAGACGGATCTACGATATAGTCAACGTTTTGGAGAGTATTGGGGTCCTTGCCAGAAAGGCGAAGAATCAATATACGTGGAAAGGTTTCGGTGCAATTCCAGGGGCTTTGCTGGAGCTCAAGGAAGAGGGTTTGAGGGAGAACCCCAATGTCTTCGATGGTGGAAATGACAATGCAAAAGTGTCCGATGACGACGACGACGAGGAAATATTATCCAATCCCAGTACTGGAAGTCAGAATGGCGATTCGAATCCTCCTACTCTTGCTAGATCTCTTAGAAATGATAATCGAAGAGAAAAATCTCTGGCGCTGCTTACACAGAATTTTGTGAAGCTCTTTGTCTGCTCTAACATGGACTTGATCTCCCTTGACGAGGCTGCAAAATTGTTACTTGGAGATGCCCATAACTCATCAATAATGAGAACAAAAGTTAGACGCCTGTATGATATTGCAAATGTGCTATCCTCCATGAAACTGATTGAGAAGACCCATACGACAAATACAAGAAAACCAGCATTCAGGTGGCTGGGGTGTAAAGGGAAGAAATGGAATGAGTCACTTCACAACTCAAATGTCAACGAGTCTAGGAAAAGGGCGTTTGGAAAAGATATCACAAATATCAGTTTTAAGAATAATAAAACGGATTTATTCATGAATGGGGACTTAGCCCAGAACCCTAAGAAGCAAAAACTGGATAATGGTAGTGACCTAGGTCAGGCGGATAAAAGCAATTTAGAACAAGGCTCAGAACAGGCTTCAAAGTGCTATCAGTTTGGTCCTTTCGCTCCAGCCTACGTGACCAAAGTTGGAGCCTCTGAGAATCGGGCGCATGATTGGGAGAGTCTCGCAACTGAGCATCGCCCTCGGTATGAAAACCAAGCATTGAGAGAACTCTTCTTCCATTACGTAGAAGCATGGAAATCGTGGTACGCTGAAGTCGCCGAGAAGAGGCCATTGCAAATTTTGTGA 1137 0.4485 MALSSSITDIASSKDCTYSRKQKSLGLLCTNFLSLYDRDTVHLIGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPGALLELKEEGLRENPNVFDGGNDNAKVSDDDDDEEILSNPSTGSQNGDSNPPTLARSLRNDNRREKSLALLTQNFVKLFVCSNMDLISLDEAAKLLLGDAHNSSIMRTKVRRLYDIANVLSSMKLIEKTHTTNTRKPAFRWLGCKGKKWNESLHNSNVNESRKRAFGKDITNISFKNNKTDLFMNGDLAQNPKKQKLDNGSDLGQADKSNLEQGSEQASKCYQFGPFAPAYVTKVGASENRAHDWESLATEHRPRYENQALRELFFHYVEAWKSWYAEVAEKRPLQIL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2040g00017 378 MobiDBLite consensus disorder prediction 128 147 - -
Gabi2040g00017 378 FunFam E2F transcription factor-like E2FE 148 235 - -
Gabi2040g00017 378 Gene3D - 148 235 IPR036388 -
Gabi2040g00017 378 Gene3D - 15 88 IPR036388 -
Gabi2040g00017 378 MobiDBLite consensus disorder prediction 282 302 - -
Gabi2040g00017 378 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
Gabi2040g00017 378 MobiDBLite consensus disorder prediction 104 147 - -
Gabi2040g00017 378 FunFam E2F transcription factor 8 15 87 - -
Gabi2040g00017 378 PANTHER TRANSCRIPTION FACTOR E2F 16 346 IPR015633 GO:0000978|GO:0006357
Gabi2040g00017 378 MobiDBLite consensus disorder prediction 274 302 - -
Gabi2040g00017 378 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
Gabi2040g00017 378 SMART E2F_TDP_2 20 85 IPR003316 GO:0005667|GO:0006355
Gabi2040g00017 378 Pfam E2F/DP family winged-helix DNA-binding domain 21 85 IPR003316 GO:0005667|GO:0006355
Gabi2040g00017 378 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Gabi2040g00017 378 SUPERFAMILY "Winged helix" DNA-binding domain 19 83 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2040g00017 Gabi-Chr2040 183264 188505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2040g00017 17 375 E2F-DP Transcription Factor Family AT3G48160 55.586 3.99e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi2040g00017 E2F_TDP 1.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2040g00017 K09391 - gmx:100806151 552.747