Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2040g00015 ATGGCTGCCGCCGGCGAAGTTTTCAGGCAGAATTTTACTGAGATGTTCGAGGAGTCACCTTCCGGTGCAGACGAGCTGCACGTTCTTGCTGTTGATGACAGCCTCGTCGATCGCAAGTTAATTGAACGCTTGCTCAAGATTTCTTCTTGCAAAGTGACGGTTGTAGAGAGTGGAACACGAGCTCTTCAGTATTTGGGATTGGACGGAGAGAAGGGTTCTCTAGGGCTTGATGGTGTGAAGGTTAATCTGATAATGACGGATTATTCCATGCCGGGGATGACTGGATATGAACTACTCAAGAAAATCAAGCAGGAGTCTTCTGTTTTTAGAGAGATTCCAGTGGTGGTCATGTCGTCGGAGAATATCTTGACTCGAATTGATAAGTGCCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCCGTCAAGTTGTCAGATGTAACACGCCTAAAAGATTTCATCATGAGAGGTGAAATGAAAGAAAGCGAGAAAGGATCTCCCAAAAGAAGACGATCAGATGATGATTGCAGTCCATCTTTATCAACTATGTTCTCACCAATGTCTCATCCATGCGATCCATCATCAGTAATTTCACCATTATCACCATCCACATTATTATCCTCAAAGAAGTCTAGATTGTGA 642 0.4439 MAAAGEVFRQNFTEMFEESPSGADELHVLAVDDSLVDRKLIERLLKISSCKVTVVESGTRALQYLGLDGEKGSLGLDGVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRIDKCLEEGAEEFLLKPVKLSDVTRLKDFIMRGEMKESEKGSPKRRRSDDDCSPSLSTMFSPMSHPCDPSSVISPLSPSTLLSSKKSRL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2040g00015 213 SMART REC_2 26 151 IPR001789 GO:0000160
Gabi2040g00015 213 CDD REC_typeA_ARR 28 150 - -
Gabi2040g00015 213 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 170 IPR045279 GO:0009736
Gabi2040g00015 213 MobiDBLite consensus disorder prediction 177 213 - -
Gabi2040g00015 213 Gene3D - 26 182 - -
Gabi2040g00015 213 SUPERFAMILY CheY-like 25 152 IPR011006 -
Gabi2040g00015 213 MobiDBLite consensus disorder prediction 158 176 - -
Gabi2040g00015 213 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
Gabi2040g00015 213 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Gabi2040g00015 213 MobiDBLite consensus disorder prediction 158 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2040g00015 Gabi-Chr2040 152763 155201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2040g00015 3 171 Response Regulator Gene Family AT1G19050 66.857 9.97e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2040g00015 Response_reg 2.3e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2040g00015 K14492 - gmx:100527518 297.36