Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2040g00013 ATGGCTGCCGCCGGCGAAGTTTTCAGGCAGAATTTTACTGAGATGTTCGAGGAGTCACCTTCCGGTGCAGACGAGCTGCACGTTCTTGCTGTTGATGACAGCCTCGTCGATCGCAAGTTAATTGAACGCTTGCTCAAGATTTCTTCTTGCAAAGTGACGGTTGTAGAGAGTGGAACACGAGCTCTTCAGTATTTGGGATTGGACGGAGAGAAGGGTTCTCTAGGGCTTGATGTAAGAAAATCTTGCTTTTGGATTCTTAACTGTGATTCGATGATGATGTTAGTTGCGTGGAAATGGTGGTTGCTAACGTTTTTGTTTGATTGGTTACGGTTGCAGGGTGTGAAGGTTAATCTGATAATGACGGATTATTCCATGCCGGGGATGACTGGATATGAACTACTCAAGAAAATCAAGGAGTCTTCTGTTTTTAGAGAGATTCCAGTGGTGGTCATGTCGTCGGAGAATATCTTGACTCGAATTGATAAGTGCCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCCGTCAAGTTGTCAGATGTAACACGCCTAAAAGATTTCATCATGAGAGGTGAAATGAAAGAAAGCGAGAAAGGATCTCCCAAAAGAAGACGATCAGATGATGATTGCAGTCCATCTTTATCAACTATGTTCTCACCAATGTCTCATCCATGCGATCCATCATCAGTAATTTCACCATTATCACCATCCACATTATTATCCTCAAAGAAGTCTAGATTGTGA 744 0.4341 MAAAGEVFRQNFTEMFEESPSGADELHVLAVDDSLVDRKLIERLLKISSCKVTVVESGTRALQYLGLDGEKGSLGLDVRKSCFWILNCDSMMMLVAWKWWLLTFLFDWLRLQGVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDKCLEEGAEEFLLKPVKLSDVTRLKDFIMRGEMKESEKGSPKRRRSDDDCSPSLSTMFSPMSHPCDPSSVISPLSPSTLLSSKKSRL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2040g00013 247 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 203 IPR045279 GO:0009736
Gabi2040g00013 247 SUPERFAMILY CheY-like 111 185 IPR011006 -
Gabi2040g00013 247 ProSiteProfiles Response regulatory domain profile. 27 189 IPR001789 GO:0000160
Gabi2040g00013 247 SUPERFAMILY CheY-like 25 68 IPR011006 -
Gabi2040g00013 247 MobiDBLite consensus disorder prediction 193 210 - -
Gabi2040g00013 247 MobiDBLite consensus disorder prediction 193 247 - -
Gabi2040g00013 247 SMART REC_2 26 185 IPR001789 GO:0000160
Gabi2040g00013 247 CDD REC_typeA_ARR 28 184 - -
Gabi2040g00013 247 Gene3D - 26 216 - -
Gabi2040g00013 247 MobiDBLite consensus disorder prediction 211 247 - -
Gabi2040g00013 247 Pfam Response regulator receiver domain 112 181 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2040g00013 Gabi-Chr2040 152761 155202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2040g00013 3 205 Response Regulator Gene Family AT1G19050 55.981 1.51e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2040g00013 Response_reg 2.6e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2040g00013 K14492 - gmx:100796843 282.337