Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2040g00012 ATGGCTGCCGCCGGCGAAGTTTTCAGGCAGAATTTTACTGAGATGTTCGAGGAGTCACCTTCCGGTGCAGACGAGCTGCACGTTCTTGCTGTTGATGACAGCCTCGTCGATCGCAAGTTAATTGAACGCTTGCTCAAGATTTCTTCTTGCAAAGTGACGGTTGTAGAGAGTGGAACACGAGCTCTTCAGTATTTGGGATTGGACGGAGAGAAGGGTTCTCTAGGGCTTGATGGTGTGAAGGTTAATCTGATAATGACGGATTATTCCATGCCGGGGATGACTGGATATGAACTACTCAAGAAAATCAAGCAGGAGTCTTCTGTTTTTAGAGAGATTCCAGTGGTGGTCATGTCGTCGGAGAATATCTTGACTCGAATTGATAACAGGTGCCTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCCGTCAAGTTGTCAGATGTAACACGCCTAAAAGATTTCATCATGAGAGGTGAAATGAAAGAAAGCGAGAAAGGATCTCCCAAAAGAAGACGATCAGATGATGATTGCAGTCCATCTTTATCAACTATGTTCTCACCAATGTCTCATCCATGCGATCCATCATCAGTAATTTCACCATTATCACCATCCACATTATTATCCTCAAAGAAGTCTAGATTGTGA 645 0.445 MAAAGEVFRQNFTEMFEESPSGADELHVLAVDDSLVDRKLIERLLKISSCKVTVVESGTRALQYLGLDGEKGSLGLDGVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRIDNRCLEEGAEEFLLKPVKLSDVTRLKDFIMRGEMKESEKGSPKRRRSDDDCSPSLSTMFSPMSHPCDPSSVISPLSPSTLLSSKKSRL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2040g00012 214 SMART REC_2 26 152 IPR001789 GO:0000160
Gabi2040g00012 214 MobiDBLite consensus disorder prediction 178 214 - -
Gabi2040g00012 214 Gene3D - 26 183 - -
Gabi2040g00012 214 ProSiteProfiles Response regulatory domain profile. 27 156 IPR001789 GO:0000160
Gabi2040g00012 214 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
Gabi2040g00012 214 MobiDBLite consensus disorder prediction 159 214 - -
Gabi2040g00012 214 MobiDBLite consensus disorder prediction 159 177 - -
Gabi2040g00012 214 CDD REC_typeA_ARR 28 151 - -
Gabi2040g00012 214 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 171 IPR045279 GO:0009736
Gabi2040g00012 214 SUPERFAMILY CheY-like 25 153 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2040g00012 Gabi-Chr2040 152761 155202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2040g00012 3 172 Response Regulator Gene Family AT1G19050 66.477 8.24e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2040g00012 Response_reg 4e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2040g00012 K14492 - gmx:100527518 293.893