Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2040g00004 ATGTCTGTTGCCTCCGCCGCTGCAGATTCCGCCGTCTCCGGCGAGATCATGCTGTTCGGAGTTAGGGTCGTTGTTGATTCCATGAGAAAAAGCGTTAGTATGAACAATCTCTCACAGTACGAGCATCCTCAGGACGCCAACAACAACAATAGCAACAAAGACGTTCCCGCCGCTGGTTACGCCTCCGCAGACGATGCCGTTCCTCATAACTCCGCGAAGCACCGCGAACGCGAGCGCAAGCGAGGTGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTCTTGGTGGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCCAGAAACTACGTGAAAACGAGAACGCCGACGCAGGTTGCCAGCCATGCTCAGAAGTACTTTCTCCGCCGAAGTAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACTGACACGGTCTCTGCTATCCCAATGGAGGAAGAACAGGTCCAGAATCAAGACTGCGTGTCTCATTCACAGTCCGTGTGCCCTGCAGCCCCTGAAACTAGCAAAATCAATGGATTTCCAATGATGCCAGTATATCAGTTGGGTATTGGTTCTGGAGTGATTTCAGTCCAAACTGGGAATCCTATGGAAGAACTCAGTCTAGGACAAGGAAACATGGAACACAATGCGCTAACCAAGCTGGTCCGTCCAATTCCTTTTGTTCCTGAACCTAAAACATCCACCGTGTCTGATATCACTTCCAGTTCAAGTTCAGCTGTTGACCCACCAACACTGTCCCTCGGGCTATCCTTCTCATCTGATCAAAGGCAGACATCATCAAGACATTCAGCTTTACATGCAATGCCATGTTTCAACAATGGAGATAGCATCATAAGTGTTGCTTGA 888 0.5 MSVASAAADSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDANNNNSNKDVPAAGYASADDAVPHNSAKHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDCVSHSQSVCPAAPETSKINGFPMMPVYQLGIGSGVISVQTGNPMEELSLGQGNMEHNALTKLVRPIPFVPEPKTSTVSDITSSSSSAVDPPTLSLGLSFSSDQRQTSSRHSALHAMPCFNNGDSIISVA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2040g00004 295 MobiDBLite consensus disorder prediction 40 83 - -
Gabi2040g00004 295 FunFam transcription factor MYB1R1 83 134 - -
Gabi2040g00004 295 SUPERFAMILY Homeodomain-like 79 134 IPR009057 -
Gabi2040g00004 295 MobiDBLite consensus disorder prediction 68 83 - -
Gabi2040g00004 295 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Gabi2040g00004 295 ProSiteProfiles SANT domain profile. 80 133 IPR017884 -
Gabi2040g00004 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 133 IPR017930 -
Gabi2040g00004 295 ProSiteProfiles Myb-like domain profile. 77 129 IPR001005 -
Gabi2040g00004 295 PANTHER TRANSCRIPTION FACTOR KUA1 15 239 - -
Gabi2040g00004 295 Gene3D - 83 135 - -
Gabi2040g00004 295 SMART sant 81 131 IPR001005 -
Gabi2040g00004 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 80 131 IPR006447 GO:0003677
Gabi2040g00004 295 CDD SANT 84 129 IPR001005 -
Gabi2040g00004 295 MobiDBLite consensus disorder prediction 40 56 - -
Gabi2040g00004 295 MobiDBLite consensus disorder prediction 240 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2040g00004 Gabi-Chr2040 46882 49474 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi2040g00004 Myb_DNA-binding 8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2040g00004 - - gmx:778059 414.846