Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2040g00003 ATGGTGTCAACATATGAGAAGAAGAAGAAAAGCCTTCACTCGCTGATGGCTGCTAACCTGAGCAAGCTCACCATACCCTCTTCATCATCCTCCAACGAATCTCCATCTCCATCTGCATCTGCATCTACATCTACATCTACATCTACATCTACATCCATTGTGAGCCCACACGTGATCCACAGTAGGTCCCACTCCTTTGTGGGTCCCTCTCCTCGCTTCCGTACTTCCTCCAATTCCCTCTTCCTTCTCACCGAGGAAGAGGATTCCGAATCTGATGAAAAGCCAGTGATTGTTAGTAGTGTGAGTGAACCAACAGCAACAGCAACAGCATCAGAGAAAGTGGTTCATAAAATTGGACCTGGGGATTTTCAGATTTTGAGAGTTGTTGGACAAGGTGCCTTTGGGAAAGTGTTTCTTGTGAGGAAAAAGGGAGATTTTTTCGATGGTGATGGTGATGGTGATGGGGTCTTCGCAATGAAGGTGATGAGAAAAGAAACCATCATTAGAAAAAATCATGTCGATTATATGAAAGCTGAGAGAGATATTCTCACTAAAGTGCTTCATCCTTTTATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCTAAGTTATATTTGATATTGGATTTCATCAATGGAGGTCATCTTTTCTTTCATCTATATAGGCAGGGTATATTCAGAGAGGATCAGGCAAGGATTTACACTGCTGAGATAGTATCTGCTGTTTCACATCTTCACAAGAATGGCATCGTGCATCGGGATCTTAAACCTGAAAACATACTCATGGATGCTGATGGGCATGTGATGCTAACTGATTTTGGACTGTCAAAAGAAATTGATGAATTCGGAAGATCCAACTCTATGTGTGGGACCACGGAATATATGGCTCCGGAAATCCTACTGGCTAAAGGCCATAACAAGGATGCAGATTGGTGGAGTGTCGGTATTCTGTTGTATGAAATGCTAACAGGGAAGGCACCCTTTACACACACTAACAGAAAGAAGCTTCAGGAGAAAATTATTAAAGAGAAAGTTAAACTTCCACCATATCTTACCAGTGAAGCTCACTCTTTGCTCAAAGGATTTCTGCAAAAGGATCCATCAACAAGGCTAGGCAGCGGGCCAAATGGAGATGAGCAGATCAAAAGTCATAAATGGTTTCGGTCAATCAATTGGAACAAATTGGAGGCAAGAGAACTGCAACCAAAGTTCAAACCAGATGTGTCTGGAAAAGACTGTACAGCTAATTTTGACCAATGCTGGACAGCAATGCCTCTTGATGACTCGCCAGCTCCCACCCCTACAGCAGGCGACCATTTCCAGGGCTATACTTACGTCGCACCAAACCCTTGGCTTTCATCAGGATAG 1368 0.4327 MVSTYEKKKKSLHSLMAANLSKLTIPSSSSSNESPSPSASASTSTSTSTSTSIVSPHVIHSRSHSFVGPSPRFRTSSNSLFLLTEEEDSESDEKPVIVSSVSEPTATATASEKVVHKIGPGDFQILRVVGQGAFGKVFLVRKKGDFFDGDGDGDGVFAMKVMRKETIIRKNHVDYMKAERDILTKVLHPFIVQLRYSFQTKSKLYLILDFINGGHLFFHLYRQGIFREDQARIYTAEIVSAVSHLHKNGIVHRDLKPENILMDADGHVMLTDFGLSKEIDEFGRSNSMCGTTEYMAPEILLAKGHNKDADWWSVGILLYEMLTGKAPFTHTNRKKLQEKIIKEKVKLPPYLTSEAHSLLKGFLQKDPSTRLGSGPNGDEQIKSHKWFRSINWNKLEARELQPKFKPDVSGKDCTANFDQCWTAMPLDDSPAPTPTAGDHFQGYTYVAPNPWLSSG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2040g00003 455 SUPERFAMILY Protein kinase-like (PK-like) 103 431 IPR011009 -
Gabi2040g00003 455 Gene3D Phosphorylase Kinase; domain 1 122 429 - -
Gabi2040g00003 455 ProSiteProfiles AGC-kinase C-terminal domain profile. 388 455 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi2040g00003 455 Pfam Protein kinase domain 123 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2040g00003 455 MobiDBLite consensus disorder prediction 25 54 - -
Gabi2040g00003 455 SMART pkinase_C_6 388 447 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi2040g00003 455 Gene3D Transferase(Phosphotransferase) domain 1 211 406 - -
Gabi2040g00003 455 FunFam Non-specific serine/threonine protein kinase 121 235 - -
Gabi2040g00003 455 SMART serkin_6 123 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2040g00003 455 ProSiteProfiles Protein kinase domain profile. 123 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2040g00003 455 ProSitePatterns Protein kinases ATP-binding region signature. 129 160 IPR017441 GO:0005524
Gabi2040g00003 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Gabi2040g00003 455 Pfam Protein kinase C terminal domain 408 445 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gabi2040g00003 455 PANTHER RIBOSOMAL PROTEIN S6 KINASE 33 449 - -
Gabi2040g00003 455 FunFam Non-specific serine/threonine protein kinase 211 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2040g00003 Gabi-Chr2040 31164 37122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2040g00003 35 448 AGC Kinase Gene Family AT3G08720 59.907 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Gabi2040g00003 Pkinase 2.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2040g00003 K04688 - gmx:100798259 669.848