Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2032g00018 ATGATGGCCGAGACCAGAAAATACATTCCGAACGTTCAACAATTAGGATTAGAGCTTGAAGAGATACTACGAGAAGCCAAGCATCGTTGGCTTCGTCCTGCTGAAATATGCGAAATACTTCGCAATTATCGCAAGTTTGAGTTAACATCAGTTCCACCGATTACGCCTCCAGCTGGATCACTATTCTTGTTTGATCGAAAAGCTCTTCGTTACTTTCGCAAGGATGGTCACCGGTGGAGAAAAAAGAAAGACGGGAGGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTATTATGCTCATGGGGAGGATGATGACAACTTTCAACGGAGATGTTATTGGATGCTTGATGAGCAGTTAGAGCACATTGTCCTTGTGCATTATCGAGAAATTAAAGAGGGATGCAGGTCTGGCATCTCACATTTTCCTGTAGTCCCAGTTACCCAGGTTGGTGGCTCTCAAAGTAGTTCAGCGCCTTCCTCTGGCAAAATAAACTCCCCATTATCCGTAGCTCAAACATCTTTTACATCAAGTGAAAATAAAGTTGATCAGAATGGACGAGCTTCAGAGTATAAGGATGCTGACTCACAGAAAGGTCTTCAAGCCTCTTCTCATGCCCAACCTATCAGCAATTCCATACTTTGTGGTGCACCTCGGCTTGCACATGAAACCACCGGTGGGTTTTCTCAGTTACCAAGAAATCCCTTTATTTCGTGGTCATCTTCTCTCCCTAGCTTTTCTTCTGATACTGGCTTGTCCCCGTGGGCTCTGGTTCAGAACTCTGGCAGAAACACGGTTTACATGCATGATAGAGAACTGCATGTTGAAGGATCCACTGAAGGCCCTGAAGCTGACTTCACTGTTCATAAGCTAAGCGATGCAGTTCACAAAATGCAAGATGGTATAATTTTCAGAGATAGGCTTAGTACTGGCAAGTATATCCAGCCAGTTACAGGAGCTTTACAGACTGTAAATCAGGAGCATGATTTAGATTCATTTCATACCCTATTCCATGGTCATACTGATCTAACAGTTGCTGCAACTACTACAGTCCTTGTTGAACAAAAATTTCAAGATGGTGGTACACACAATGATGAGTCAGAACATGTTGAATCTGGTGAATTGAAAAAGCTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGTGACTGTGATAATTCCTTGATGGCTTCAGACTCTGGCAATTATTGGAGCACACTTGATGCTCATAATGAGGATAAGGAGGTGTCTAGTTTATGCCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCTCAAGAACAACTATTTAGTATCCATGACTTCTCTCCAGAATGGGCATACGCTGGGGATAGAACAAAGGTTTTAATAGTTGGTACATTTCTGGGGAGTAAAACGCTTTCTAGTGAGACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGTTTTGGCAGAGAATGTCATACGGTGCCAGACTCCTTTGCATTCACCTGGTCGTGTTCCATTCTATGTTACCTGCAGCAATAGGTTAGCCTGTAGCGAGATCAGAGAATTTGAATATCATGAAAATCCAACTAAATTTTTTGCTCCTGTGGGTATTAAAATCTCACCAGAAGATGAGGTACGGCTTCAAATGCGACTACTTAAACTAGTAGACTTGGGACCTGACAAGAAGTGGTTGAAGTGCTCTGTTTCTGAATGCGAAAAATGTAAACTTAAGGAAACAATGTATTCCATGAGAGGTGATAATGGAGTATTAAAAGAAACTTTCCAGATTGATGGAAGTGATCACATAAACCCTAGAGATGTGTTATTTCAGAAATTAATGAGAGACAGGCTTTATGAGTGGTTGATATTTAAGGTTCATGAAGGAGGAAAAGGACCACAAGTGTTGGACAATGAAGGCCAAGGAGTAATACATTTGGCTGCTGCCCTTGGTTATGTGTGGGCTATGGGCCCATTAATTGCTGTTGGTATCAGTCCTAACTTTAGAGATGCTCATGGAAGAACAGGACTTCACTGGGCGTCATATTTTGGAAGAGAAGAAACTGTGATTGCCCTAGTCAAATTAGGAGCAGCCCCAGGTGCCGTTGAGGATCCAACATCATCATTTCCTCGAGGACAAACAGCAGCAGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCTGAGGCAGATCTGACTAGTCAATTATCTACATTGAGTGTCAATGAAAATGAGATGGACAACAGTGCCACAAACCTATCAGCTGACCATGCTTTTGAGTCTTCTGAAGGGTACTCATCTAATATGACAATGGATGAGCAACATTATCTAAAAGAGTCACTTGCTGCTTTTCAGAAATCAGCTCATGCAGCTGCTTCAATCCAAGCAGCCTTTAGAGCAAGATCATTCTGTCAGAGACAATTAGCCAAAAGTAGCAGTGATATTTCTGAAGTAGTACATGACCTAGTTGGTGAATCTTTGAACAAGGTTCAGAAGATGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAAGATTCAAAAGAAATATCGTGGGTGGAAGGGAAGAAACAATTTTTTGAAAATACGCAACCGCATCATAAAAATTCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCTGTACAAAAAAGTTGTTTGGTCTGTTAGCATTGTGGAAAAGGCAATACTGCGTTGGAGGCGGAAAAGAGCTGGTCTGCGAGGATTCCGAGTTGGGCCATCAGTTGGCATTGTTGCCAAAGATGATGACAAAAATGATGAGTATGAATTTCTTAGCATTGGGCGGAGACAGAAATCTGATGATGTAAAGAAAGCTCTGGATAGAGTGAAGTCCATGGTTCGTCACCCAGAGGCACGAGATCAGTATATGAGGCTCATCATGAAATATCAGACTTATAAGATTGATGATGGTGGAAACAGTCAATCACAGCCTGTTGATTAG 3009 0.4187 MMAETRKYIPNVQQLGLELEEILREAKHRWLRPAEICEILRNYRKFELTSVPPITPPAGSLFLFDRKALRYFRKDGHRWRKKKDGRTVREAHEKLKAGSVDVLHCYYAHGEDDDNFQRRCYWMLDEQLEHIVLVHYREIKEGCRSGISHFPVVPVTQVGGSQSSSAPSSGKINSPLSVAQTSFTSSENKVDQNGRASEYKDADSQKGLQASSHAQPISNSILCGAPRLAHETTGGFSQLPRNPFISWSSSLPSFSSDTGLSPWALVQNSGRNTVYMHDRELHVEGSTEGPEADFTVHKLSDAVHKMQDGIIFRDRLSTGKYIQPVTGALQTVNQEHDLDSFHTLFHGHTDLTVAATTTVLVEQKFQDGGTHNDESEHVESGELKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTLDAHNEDKEVSSLCHMQLDMDSLGPSLSQEQLFSIHDFSPEWAYAGDRTKVLIVGTFLGSKTLSSETKWGCMFGEIEVSAEVLAENVIRCQTPLHSPGRVPFYVTCSNRLACSEIREFEYHENPTKFFAPVGIKISPEDEVRLQMRLLKLVDLGPDKKWLKCSVSECEKCKLKETMYSMRGDNGVLKETFQIDGSDHINPRDVLFQKLMRDRLYEWLIFKVHEGGKGPQVLDNEGQGVIHLAAALGYVWAMGPLIAVGISPNFRDAHGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSSFPRGQTAADLASSRGHKGIAGYLAEADLTSQLSTLSVNENEMDNSATNLSADHAFESSEGYSSNMTMDEQHYLKESLAAFQKSAHAAASIQAAFRARSFCQRQLAKSSSDISEVVHDLVGESLNKVQKMGHFEDYLHFAALKIQKKYRGWKGRNNFLKIRNRIIKIQAHIRGHQVRKLYKKVVWSVSIVEKAILRWRRKRAGLRGFRVGPSVGIVAKDDDKNDEYEFLSIGRRQKSDDVKKALDRVKSMVRHPEARDQYMRLIMKYQTYKIDDGGNSQSQPVD 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2032g00018 1002 Gene3D - 626 748 IPR036770 -
Gabi2032g00018 1002 SMART ANK_2a 722 751 IPR002110 GO:0005515
Gabi2032g00018 1002 SMART ANK_2a 683 712 IPR002110 GO:0005515
Gabi2032g00018 1002 Pfam IPT/TIG domain 451 536 IPR002909 -
Gabi2032g00018 1002 Pfam IQ calmodulin-binding motif 880 899 IPR000048 GO:0005515
Gabi2032g00018 1002 Pfam IQ calmodulin-binding motif 858 875 IPR000048 GO:0005515
Gabi2032g00018 1002 ProSiteProfiles Ankyrin repeat region circular profile. 683 708 - -
Gabi2032g00018 1002 FunFam Calmodulin-binding transcription activator 2 854 902 - -
Gabi2032g00018 1002 SMART CG_1_2 22 140 IPR005559 GO:0003677
Gabi2032g00018 1002 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Gabi2032g00018 1002 Gene3D Immunoglobulins 444 542 IPR013783 -
Gabi2032g00018 1002 SUPERFAMILY E set domains 451 536 IPR014756 -
Gabi2032g00018 1002 MobiDBLite consensus disorder prediction 182 213 - -
Gabi2032g00018 1002 ProSiteProfiles IQ motif profile. 878 906 IPR000048 GO:0005515
Gabi2032g00018 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 850 905 IPR027417 -
Gabi2032g00018 1002 CDD IPT 450 538 - -
Gabi2032g00018 1002 ProSiteProfiles Ankyrin repeat profile. 683 715 IPR002110 GO:0005515
Gabi2032g00018 1002 FunFam Calmodulin-binding transcription activator 2 444 541 - -
Gabi2032g00018 1002 Pfam CG-1 domain 25 138 IPR005559 GO:0003677
Gabi2032g00018 1002 Gene3D - 853 902 - -
Gabi2032g00018 1002 ProSiteProfiles CG-1 DNA-binding domain profile. 19 145 IPR005559 GO:0003677
Gabi2032g00018 1002 SMART iq_5 801 825 IPR000048 GO:0005515
Gabi2032g00018 1002 SMART iq_5 854 876 IPR000048 GO:0005515
Gabi2032g00018 1002 SMART iq_5 877 899 IPR000048 GO:0005515
Gabi2032g00018 1002 SUPERFAMILY Ankyrin repeat 638 745 IPR036770 -
Gabi2032g00018 1002 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 19 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2032g00018 Gabi-Chr2032 264314 273330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2032g00018 63 982 CAMTA Transcription Factor Family AT2G22300 38.558 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi2032g00018 CG-1 8.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2032g00018 K21596 - gmx:100818336 1574.68