Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2030g00004 ATGGACTCGCGCGCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGTCGACGAGCTGGTCTCATCAAAGCCCTAACCACCGATGTTGAAGATTTCTATAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATACGGCTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAACTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAATCTAAGTCCAGCTCTAAACGGGCTCCAGAATCTCAGGGTAGGCAGTCAAAGGCATTGCAACCAAAAGATGACGATGAAGAGCTGGATGAGCAAGATGAGGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCCAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 759 0.4559 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFELVTGAAKKQVKEKSSVSNHSGSKSKSSSKRAPESQGRQSKALQPKDDDEELDEQDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2030g00004 252 FunFam PHD finger alfin-like protein 191 247 - -
Gabi2030g00004 252 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Gabi2030g00004 252 MobiDBLite consensus disorder prediction 145 190 - -
Gabi2030g00004 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Gabi2030g00004 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Gabi2030g00004 252 SMART PHD_3 198 246 IPR001965 -
Gabi2030g00004 252 Pfam PHD-finger 199 248 IPR019787 -
Gabi2030g00004 252 CDD PHD_AL_plant 198 248 IPR044104 -
Gabi2030g00004 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Gabi2030g00004 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Gabi2030g00004 252 MobiDBLite consensus disorder prediction 150 174 - -
Gabi2030g00004 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2030g00004 Gabi-Chr2030 12025 17273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2030g00004 5 251 Alfin-like Transcription Factor Family AT3G42790 76.518 3.40e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2030g00004 Alfin 8e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2030g00004 K26274 - gmx:100170700 464.536