Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2030g00003 ATGGACTCGCGCGCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTTAGGGATTTCAAGGGTCGACGAGCTGGTCTCATCAAAGCCCTAACCACCGATGTTGAAGATTTCTATAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATACGGCTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAACTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGCATCAAAGGCATTGCAACCAAAAGATGACGATGAAGAGCTGGATGAGCAAGATGAGGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCCAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCCCCTGA 735 0.4503 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFELVTGAAKKQVKEKSSVSNHSGSKSKSSSKASKALQPKDDDEELDEQDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2030g00003 244 ProSitePatterns Zinc finger PHD-type signature. 191 237 IPR019786 -
Gabi2030g00003 244 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Gabi2030g00003 244 SUPERFAMILY FYVE/PHD zinc finger 180 241 IPR011011 -
Gabi2030g00003 244 MobiDBLite consensus disorder prediction 150 166 - -
Gabi2030g00003 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 239 IPR013083 -
Gabi2030g00003 244 MobiDBLite consensus disorder prediction 147 182 - -
Gabi2030g00003 244 Pfam PHD-finger 191 240 IPR019787 -
Gabi2030g00003 244 CDD PHD_AL_plant 190 240 IPR044104 -
Gabi2030g00003 244 ProSiteProfiles Zinc finger PHD-type profile. 188 240 IPR019787 -
Gabi2030g00003 244 SMART PHD_3 190 238 IPR001965 -
Gabi2030g00003 244 FunFam PHD finger alfin-like protein 183 239 - -
Gabi2030g00003 244 PANTHER CPG BINDING PROTEIN 8 243 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2030g00003 Gabi-Chr2030 12025 17274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2030g00003 5 243 Alfin-like Transcription Factor Family AT3G42790 76.016 1.03e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2030g00003 Alfin 7.4e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2030g00003 K26274 - gmx:100170700 443.736