Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi202g00013 ATGGATGGGGATCATGACGAGTTGGGTACTGTGCATGAAGAGAATGTTGATCTTGGACCTCAGACACCGAATGACTTGGACTTGAATGTGGAGCAGAACTGTTGCAGCCCAGACATTGTTCATGTTTATGGCTCTCAATCTGGTCTTTCTTCAACAAATGTACTCAGCAACAGTACGGTGTTGGGAATTGGTACGGAATTTGAGTCTGATGACCATGCATACAGATTCTATAATAAGTATGCCAGATTGGTGGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAAGTACATGGTCAGGTGGTGTCTAGGAAGTTTACCTGCTCCAAAGAGGGATACCGCAGGAAAGACAAAAGAGATACTAATGTGAAGAAACATAGGAAGGAAACCAGAACTGGCTGCTTGGCACACATGATCATCACTCGTCAACCAGATGGTAAATATCAGGTCACCCACTTTGAATCACAACATAATCATGACAATATAAACCCTAGCAATGCTAACATGTTAAACTTGCAAAATGAATTTAGTATTGCTCAAGCTGTGCATGCTGACTCCAGTAATAATTTGGGACCTAAATCAAAGTCTGCATTAGATATGATGAATAAAAAACTAGGTGCCCGTGAAACTCTTGATCAACTTTCCATGAATTATGACAATTACCTTCATTCTGAAAGGGAAAGAGACATGAGTGAAGGAGAAGCAGGGCGTTTGCTGGGTTATTTCCAAAGGCAACACTTTGAAAATCCAACATTTTTTTATGCTATACAGCTTGATGTTGATGACAAGGTAAGCAATCTATTTTGGGCTGATGACAATATGGTGGTGGATTATGACCATTTTGGTGATGTCATTTGTTTGGATACAACTTGCAGAACAAACAGAGATCTTCGGCCATTTGTACAGTTTTTAGGTGTTAATAATCACAAACAAGTGTTAATCTTTGCTGCTGCTTTTTTGTATGACAATACCATTGAATCATTTAATTGGCTATTTCGAACTTTCACTAATGCAATGTCTGGAAAAAAGCCAAAGGCCATTCTCACAGAACAAGAAGTTGTAATTATTGAAGCAGTCAATACAGTTTTACCTGAAACAAACCATTGTACATGTGTATGGCAGATGTATGAGAATACTTTGAAACACCTGAGCCATGTTGTTAAGGATGCTGAATCTTTTGCAAATGATCTAAGGAGCAGTATTTATGACCCCAAGGATGAGGAAGAATTTACTCATGCTTGGGAGGCTATGCTGGAGAAGTATAATCTCCAGCAAAATGAATGGCTGAGATGGATGTATAGAGAAAAAGAGAAATGGGCTGTTGTCTTTGGACGGAATACATTTTTTGTAGATATCAAAGGCTTTCATTTAGGTGAGCTTTTATCTCACAAGTTTAGAAGTTATTTAAATTCTGACCTTGATATAGTTCAATTTTTTAAGCATTTTGAAAGGGTAGTTGATGAGCAACGTTATAAAGAAATAGAAGCTAGTGATGAAATGAGCGGTTGTTTGCCAAGGCTCATGGGTAATGTAGTTTTGTTGAAGCATGCAAGTGATGTTTATACTCCAAGAGCATTTGAAGTATTTCAGCGAGGATATGAGAAGTCTTTAAATGTTCTTGTTAACCAAAACAGTAGAAATGGATCATTGTCTCAGTATAAAGCAAATACATTTGGGCATACTAGACAATACAGTGTTACCTTCAATTCTTCAGATGATACAGTTGTCTGCAGTTGTATGAAATTTGAGCATGTTGGATTTCTGTGTAGCCATGCACTAAAAGTTCTCGACAATAAAAACATAAAAGTAGCTCCATCACAGTATATCTTGAAGAGATGGACAAAAGATGCAAGGTTGGGAAATCTCAAGGAGATTAGGCAATATAAAATGCAAGATAACCCTAAGATGGTTGTGGCAAGTTGTTACAAAGATTTGTGCCTCAGACTTCTTAAGTTATCAGCAAGAGCCTCTGAATCTGTAGAGGCTTATCAATTTGCCACGAGGCAACTTGATGAAGTGATGGAAGGAGTGGAGAAAATCTTGACATTGAAAGTTGAGGAAGCTCAAGTTATCACCTCAAGTAGTATTGATGCAAATGCTTCAGAAAGCGAGCCTGCAGAAATCTTTCTGAATCGACATGCGATTGAGGATCAACTCGAAAGTAACAGAGTAAATGGAGAAGATAGGAGAGCTACGCAAGATAGGGACCATCAAACAACCGTGAATTGTAATGGAACTGATTCTGATAGGATTTTGAGTGTAGAAGTATCTTCTCCAAATACTGTTGTATGCATTCCAAGCCCCTCATCTGTATATGTTTCATCTCAATCCGCAGCACCAAATCCCATTTTGCAGGGTTTGTACAGTTTTGAAGCCAATCAAGCAGTTCACTGCATTTATGAGCAGCCTAATCTTGTGCTGGACCATCAATCTAATACTAACATATTCCAACCGCCAAACTTCTTTTCTAACCAGCATGATTCTCCTGGCCAATCTCAACTATTGCCGGAGCCTATAATCCAAAGCACATACCATGAGTCCATGGCAAGCAATAATCAGATGAGACAGGGGATGGATCTTGATATCCAAAATCCACATTCATCTTCATTCTTGCTGTATGACCATAGATACCGAAGTTCTGACTCTGCATAA 2655 0.3853 MDGDHDELGTVHEENVDLGPQTPNDLDLNVEQNCCSPDIVHVYGSQSGLSSTNVLSNSTVLGIGTEFESDDHAYRFYNKYARLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRDTNVKKHRKETRTGCLAHMIITRQPDGKYQVTHFESQHNHDNINPSNANMLNLQNEFSIAQAVHADSSNNLGPKSKSALDMMNKKLGARETLDQLSMNYDNYLHSERERDMSEGEAGRLLGYFQRQHFENPTFFYAIQLDVDDKVSNLFWADDNMVVDYDHFGDVICLDTTCRTNRDLRPFVQFLGVNNHKQVLIFAAAFLYDNTIESFNWLFRTFTNAMSGKKPKAILTEQEVVIIEAVNTVLPETNHCTCVWQMYENTLKHLSHVVKDAESFANDLRSSIYDPKDEEEFTHAWEAMLEKYNLQQNEWLRWMYREKEKWAVVFGRNTFFVDIKGFHLGELLSHKFRSYLNSDLDIVQFFKHFERVVDEQRYKEIEASDEMSGCLPRLMGNVVLLKHASDVYTPRAFEVFQRGYEKSLNVLVNQNSRNGSLSQYKANTFGHTRQYSVTFNSSDDTVVCSCMKFEHVGFLCSHALKVLDNKNIKVAPSQYILKRWTKDARLGNLKEIRQYKMQDNPKMVVASCYKDLCLRLLKLSARASESVEAYQFATRQLDEVMEGVEKILTLKVEEAQVITSSSIDANASESEPAEIFLNRHAIEDQLESNRVNGEDRRATQDRDHQTTVNCNGTDSDRILSVEVSSPNTVVCIPSPSSVYVSSQSAAPNPILQGLYSFEANQAVHCIYEQPNLVLDHQSNTNIFQPPNFFSNQHDSPGQSQLLPEPIIQSTYHESMASNNQMRQGMDLDIQNPHSSSFLLYDHRYRSSDSA 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi202g00013 884 MobiDBLite consensus disorder prediction 1 21 - -
Gabi202g00013 884 SMART 26again6 576 603 IPR006564 GO:0008270
Gabi202g00013 884 ProSiteProfiles Zinc finger SWIM-type profile. 565 601 IPR007527 GO:0008270
Gabi202g00013 884 Pfam SWIM zinc finger 578 600 IPR007527 GO:0008270
Gabi202g00013 884 Pfam MULE transposase domain 285 379 IPR018289 -
Gabi202g00013 884 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 680 IPR031052 GO:0006355
Gabi202g00013 884 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi202g00013 Gabi-Chr202 109027 112926 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi202g00013 MULE 3.3e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi202g00013 - K17604 gmx:100809803 1479.92