Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2029g00031 ATGACCAATGTTGGTAGCAATCCTGCTATTCCACAAGTTGGTAGAAATCCAACTGTTCCACCATCGTTCCCTGATGGATCTTCTCCTCCAGTCGTTAAAACCCGATTGTGCAACAAGTTTAATACAGTTGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCTCATGGTGAGTGGGAGCTTGGCAGGCCTACAGCACCACCATATGAAAATAGTCGTGCCTTGGGACAAATGCAAAGCAGCAGGGTTGCTGGGCGAGTTGAGCCCCCACCCGCTCATGGAGCTGCTGCCGGCTTTGGAGCCTCAGCCACTGCAAAGATTAGTATCAATGCTTCCCTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATCTGTCGCGTAACAGGAGCTAGACTTTCCATTAGGGAACATGACTCAGATCCTAACCTTAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCATGAACTTATTCTAAATGTTAGTTCTGTCTCTGGGCCTCCAATGAAAAACATTGCTACCCAGGGTTCTACCCCTGCAAGCAACTTCAAGACCAAGCTATGCGAAAACTTTACTAAAGGTTCCTGCACTTTTGGAGATAGGTGCCACTTCGCACATGGAACAGATGAATTACGCAAGCCTGGAATGTGA 687 0.4629 MTNVGSNPAIPQVGRNPTVPPSFPDGSSPPVVKTRLCNKFNTVEGCKFGDKCHFAHGEWELGRPTAPPYENSRALGQMQSSRVAGRVEPPPAHGAAAGFGASATAKISINASLAGAVIGKNGVNSKQICRVTGARLSIREHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSVSGPPMKNIATQGSTPASNFKTKLCENFTKGSCTFGDRCHFAHGTDELRKPGM 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2029g00031 228 SMART kh_6 101 171 IPR004087 GO:0003676
Gabi2029g00031 228 SMART c3hfinal6 194 220 IPR000571 GO:0046872
Gabi2029g00031 228 SMART c3hfinal6 33 58 IPR000571 GO:0046872
Gabi2029g00031 228 CDD KH-I_AtC3H36_like 106 170 - -
Gabi2029g00031 228 FunFam Zinc finger CCCH domain-containing protein 26 63 - -
Gabi2029g00031 228 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Gabi2029g00031 228 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 219 IPR000571 GO:0046872
Gabi2029g00031 228 FunFam Zinc finger CCCH domain-containing protein 189 225 - -
Gabi2029g00031 228 Gene3D - 26 63 - -
Gabi2029g00031 228 Gene3D - 191 225 - -
Gabi2029g00031 228 Pfam KH domain 105 167 IPR004088 GO:0003723
Gabi2029g00031 228 Gene3D K Homology domain, type 1 96 190 IPR036612 GO:0003723
Gabi2029g00031 228 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Gabi2029g00031 228 SUPERFAMILY CCCH zinc finger 29 62 IPR036855 GO:0046872
Gabi2029g00031 228 PANTHER CCCH ZINC FINGER/TIS11-RELATED 186 226 IPR045877 GO:0003729
Gabi2029g00031 228 SUPERFAMILY CCCH zinc finger 193 225 IPR036855 GO:0046872
Gabi2029g00031 228 ProSiteProfiles Zinc finger C3H1-type profile. 194 221 IPR000571 GO:0046872
Gabi2029g00031 228 MobiDBLite consensus disorder prediction 1 28 - -
Gabi2029g00031 228 ProSiteProfiles Type-1 KH domain profile. 102 166 - -
Gabi2029g00031 228 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 95 173 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2029g00031 Gabi-Chr2029 179293 183766 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2029g00031 KH_1 2.9e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2029g00031 - - gmx:100792652 392.504