Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2029g00029 | ATGGATCGCAAGAGAGGAAGGCTTGAAGATAACTTCAATGGTAATGGCGGCGCTAAGAAATTCAGGACAGAAACGGACTCCTTTGGAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGATGCCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAACTGCCTCTCACATGACCAATGTTGGTAGCAATCCTGCTATTCCACAAGTTGGTAGAAATCCAACTGTTCCACCATCCAGCAGGGTTGCTGGGCGAGTTGAGCCCCCACCCGCTCATGGAGCTGCTGCCGGCTTTGGAGCCTCAGCCACTGCAAAGATTAGTATCAATGCTTCCCTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATCTGTCGCGTAACAGGAGCTAGACTTTCCATTAGGGAACATGACTCAGATCCTAACCTTAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCATGAACTTATTCTAAATGTTAGTTCTGTCTCTGGGCCTCCAATGAAAAACATTGCTACCCAGGGTTCTACCCCTGCAAGCAACTTCAAGACCAAGCTATGCGAAAACTTTACTAAAGGTTCCTGCACTTTTGGAGATAGGTGCCACTTCGCACATGGAACAGATGAATTACGCAAGCCTGGAATGTGA | 720 | 0.4667 | MDRKRGRLEDNFNGNGGAKKFRTETDSFGTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKTASHMTNVGSNPAIPQVGRNPTVPPSSRVAGRVEPPPAHGAAAGFGASATAKISINASLAGAVIGKNGVNSKQICRVTGARLSIREHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSVSGPPMKNIATQGSTPASNFKTKLCENFTKGSCTFGDRCHFAHGTDELRKPGM | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2029g00029 | 239 | SMART | c3hfinal6 | 205 | 231 | IPR000571 | GO:0046872 | |
| Gabi2029g00029 | 239 | SMART | c3hfinal6 | 33 | 60 | IPR000571 | GO:0046872 | |
| Gabi2029g00029 | 239 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 206 | 230 | IPR000571 | GO:0046872 | |
| Gabi2029g00029 | 239 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 106 | 184 | IPR036612 | GO:0003723 | |
| Gabi2029g00029 | 239 | Gene3D | - | 202 | 236 | - | - | |
| Gabi2029g00029 | 239 | SMART | kh_6 | 112 | 182 | IPR004087 | GO:0003676 | |
| Gabi2029g00029 | 239 | ProSiteProfiles | Zinc finger C3H1-type profile. | 33 | 61 | IPR000571 | GO:0046872 | |
| Gabi2029g00029 | 239 | FunFam | Zinc finger CCCH domain-containing protein | 200 | 236 | - | - | |
| Gabi2029g00029 | 239 | Gene3D | K Homology domain, type 1 | 107 | 201 | IPR036612 | GO:0003723 | |
| Gabi2029g00029 | 239 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Gabi2029g00029 | 239 | SUPERFAMILY | CCCH zinc finger | 34 | 59 | IPR036855 | GO:0046872 | |
| Gabi2029g00029 | 239 | SUPERFAMILY | CCCH zinc finger | 204 | 235 | IPR036855 | GO:0046872 | |
| Gabi2029g00029 | 239 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 196 | 237 | IPR045877 | GO:0003729 | |
| Gabi2029g00029 | 239 | ProSiteProfiles | Zinc finger C3H1-type profile. | 205 | 232 | IPR000571 | GO:0046872 | |
| Gabi2029g00029 | 239 | MobiDBLite | consensus disorder prediction | 76 | 102 | - | - | |
| Gabi2029g00029 | 239 | Pfam | KH domain | 116 | 178 | IPR004088 | GO:0003723 | |
| Gabi2029g00029 | 239 | ProSiteProfiles | Type-1 KH domain profile. | 113 | 177 | - | - | |
| Gabi2029g00029 | 239 | CDD | KH-I_AtC3H36_like | 117 | 181 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2029g00029 | Gabi-Chr2029 | 179293 | 183827 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Gabi2029g00029 | KH_1 | 3.1e-11 | CL0007 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2029g00029 | - | - | thj:104799299 | 295.049 |