Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2029g00028 ATGGATCGCAAGAGAGGAAGGCTTGAAGATAACTTCAATGGTAATGGCGGCGCTAAGAAATTCAGGACAGAAACGGACTCCTTTGGAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGATGCCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAACTGCCTCTCACATGACCAATGTTGGTAGCAATCCTGCTATTCCACAAGTTGGTAGAAAAATGCAAAGCAGCAGGGTTGCTGGGCGAGTTGAGCCCCCACCCGCTCATGGAGCTGCTGCCGGCTTTGGAGCCTCAGCCACTGCAAAGATTAGTATCAATGCTTCCCTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATCTGTCGCGTAACAGGAGCTAGACTTTCCATTAGGGAACATGACTCAGATCCTAACCTTAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCATGAACTTATTCTAAATGTTAGTTCTGTCTCTGGGCCTCCAATGAAAAACATTGCTACCCAGGGTTCTACCCCTGCAAGCAACTTCAAGACCAAGCTATGCGAAAACTTTACTAAAGGTTCCTGCACTTTTGGAGATAGGTGCCACTTCGCACATGGAACAGATGAATTACGCAAGCCTGGAATGTGA 711 0.4641 MDRKRGRLEDNFNGNGGAKKFRTETDSFGTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKTASHMTNVGSNPAIPQVGRKMQSSRVAGRVEPPPAHGAAAGFGASATAKISINASLAGAVIGKNGVNSKQICRVTGARLSIREHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSVSGPPMKNIATQGSTPASNFKTKLCENFTKGSCTFGDRCHFAHGTDELRKPGM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2029g00028 236 Gene3D K Homology domain, type 1 104 198 IPR036612 GO:0003723
Gabi2029g00028 236 CDD KH-I_AtC3H36_like 114 178 - -
Gabi2029g00028 236 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Gabi2029g00028 236 ProSiteProfiles Zinc finger C3H1-type profile. 202 229 IPR000571 GO:0046872
Gabi2029g00028 236 Gene3D - 199 233 - -
Gabi2029g00028 236 SUPERFAMILY CCCH zinc finger 201 232 IPR036855 GO:0046872
Gabi2029g00028 236 FunFam Zinc finger CCCH domain-containing protein 197 233 - -
Gabi2029g00028 236 MobiDBLite consensus disorder prediction 1 31 - -
Gabi2029g00028 236 ProSiteProfiles Type-1 KH domain profile. 110 174 - -
Gabi2029g00028 236 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 233 IPR045877 GO:0003729
Gabi2029g00028 236 Pfam KH domain 113 175 IPR004088 GO:0003723
Gabi2029g00028 236 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 227 IPR000571 GO:0046872
Gabi2029g00028 236 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Gabi2029g00028 236 SMART c3hfinal6 202 228 IPR000571 GO:0046872
Gabi2029g00028 236 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 103 181 IPR036612 GO:0003723
Gabi2029g00028 236 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Gabi2029g00028 236 SMART kh_6 109 179 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2029g00028 Gabi-Chr2029 179293 183827 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2029g00028 KH_1 3.1e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2029g00028 - - thj:104799299 294.278