Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2029g00025 ATGATTTCAAACAACAAAACTTCAGATTGTAATGAAATGAATTCTGCATTTGAGGGAGCAAAACGTGCAAGGTATGAAGATATCAATGTAGGGTTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAATGGGAATTGGGGTTCACAAATATATGCAAACCATCAGAGAATATGGTTGGGGACTTTCAAATCTGAAAGAGAGGCTGCCATGGCTTATGACAGCGCTACCATCAAGCTTAGAAGTGGAGAAAGCCACAGAAACTTTCCATGGAATGATCAAACAGTTCATGAGCCTCAATTTCAAAGCCATTATAGTGCAGAAGCAGTGCTGAGAATGATTAGAGATGGCACCTATCCATCCAAATTTGCTACATTTCTTATGACTCAAAGACATGGCGAAGAAGGTGTTGAAACCAGTGCAAAGCATATAAGGGTGAAGGGTGAGGAACAATTCTCTTGCACCCAACTTTTTCAAAAAGAATTAACACCGAGTGATGTGGGCAAACTCAACAGGCTTGTTATCCCCAAAAAGCATGCAGTTACCTATTTTCCTTACGTTTGTGGCAATGCAGAAGTGAATGATGAAATGGATGGTGGGTGTGTTGACATGGAGGTTGTCTTTTATGACAAGCTCATGCGATCATGGAAATTTCGATACTGTTATTGGAAGAGTAGCCAAAGTTACGTTTTCACAAGAGGGTGGAATCGGTTTGTGAAGGATAAGAAATTGAAGGCTAAAGACATCATTGCATTTTATGTGTGTGAACCTATAAATTGGAGGAAAGGGGGAGAGGAACAAGTATTTTCATTGATCGATGTAATCTATAACGCAGATGAGAGAAGGCAATGTTTTAGAGAGATTGTAGATACCAAACAAATTTTGGGAAATAAGTCAACAAGCAGTGAAGTAGAAGATGAAGATGAAGGCCAACAGACCAAGGATACACAGGATTTGAATGCACAAAAGGGTTTGAGGCTCTTTGGTGTATGTATCAACTAA 999 0.3964 MISNNKTSDCNEMNSAFEGAKRARYEDINVGFQKFKGVVPQQNGNWGSQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDQTVHEPQFQSHYSAEAVLRMIRDGTYPSKFATFLMTQRHGEEGVETSAKHIRVKGEEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPYVCGNAEVNDEMDGGCVDMEVVFYDKLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYVCEPINWRKGGEEQVFSLIDVIYNADERRQCFREIVDTKQILGNKSTSSEVEDEDEGQQTKDTQDLNAQKGLRLFGVCIN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2029g00025 332 Pfam B3 DNA binding domain 157 253 IPR003340 GO:0003677
Gabi2029g00025 332 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 329 IPR044800 GO:0003700
Gabi2029g00025 332 SMART rav1_2 34 95 IPR001471 GO:0003700|GO:0006355
Gabi2029g00025 332 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Gabi2029g00025 332 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Gabi2029g00025 332 Gene3D - 152 269 IPR015300 -
Gabi2029g00025 332 ProSiteProfiles B3 DNA-binding domain profile. 157 274 IPR003340 GO:0003677
Gabi2029g00025 332 SMART B3_2 157 274 IPR003340 GO:0003677
Gabi2029g00025 332 CDD B3_DNA 156 252 IPR003340 GO:0003677
Gabi2029g00025 332 SUPERFAMILY DNA-binding pseudobarrel domain 155 256 IPR015300 -
Gabi2029g00025 332 ProSiteProfiles AP2/ERF domain profile. 34 89 IPR001471 GO:0003700|GO:0006355
Gabi2029g00025 332 FunFam AP2 domain-containing protein RAP2.8 33 90 - -
Gabi2029g00025 332 Gene3D AP2/ERF domain 33 90 IPR036955 GO:0003700|GO:0006355
Gabi2029g00025 332 Pfam AP2 domain 34 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2029g00025 Gabi-Chr2029 166290 167288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2029g00025 34 273 RAV Transcription Factor Family AT1G51120 60.558 1.52e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2029g00025 B3 2e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2029g00025 K09287 - gmx:102660503 426.017