Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2028g00009 ATGTTCTGCCATAACAACAATATCAGAGAGCAAAATGGAAATAGTAACAGTAACAGTTTTGCTTTCTATTCATCATGGGAGCCCATTACTGCGGCGGAGAGCTCCGCCGCCGCCACCCGCCACCATCAGCTACCACTCTACGGAGGAGGTGGGTCCCACGTGTACCCAGACCCACATCTCACATGCTTGTACCTAGGTAAGGGGCATTACTTTGAGGAAACTAATGTTGCTAATGCTACTCATCTGGGAAAGCGACACGTTTACAGTGATGGTTTTGGCTTTGAGGGTAATAATAATAATAAGAGAGGCAAAGCCTACTGTGGAAGTGGTGGAGCTGCACCGTTTGCGGCGGCGATGGTGCCAAGATGTCAGGTGGAGGGGTGCCACGTGTCACTGTTGAACGCCAAGGAGTATCACAGAAGGCACAAAGTTTGTGATATGCATTCCAAGGCACCCAAAGCTGTAGTGTTAGGGATGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTAACAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGAAGACTGGCTGGCCATAATGAGAGAAGAAGAAAGAGCTCTCATCATTCTGTTACTAGGAATTCTAAACAAGGGTGTGCTCTCTCTCTTCTGTCATATGGGAGTGAATATTCATGGCTTTCTCATGCTGATCTCTCCATAAGGTGCAGTGCAGCATTACGTGAATTGATAGCTGAAAACCGTGCTGCCCTCATGACTAGGAAGCTTGTTTTAGATAGAGACTGGAATTTTCCCCATCACGCAGTGGAAGACTTTAAGGACATACAACCTGACTCCGATTATTTTCCACAACAAATCTTTCCCCAGAAACAATAA 867 0.4637 MFCHNNNIREQNGNSNSNSFAFYSSWEPITAAESSAAATRHHQLPLYGGGGSHVYPDPHLTCLYLGKGHYFEETNVANATHLGKRHVYSDGFGFEGNNNNKRGKAYCGSGGAAPFAAAMVPRCQVEGCHVSLLNAKEYHRRHKVCDMHSKAPKAVVLGMEQRFCQQCSRFHVVTEFDDSKRSCRRRLAGHNERRRKSSHHSVTRNSKQGCALSLLSYGSEYSWLSHADLSIRCSAALRELIAENRAALMTRKLVLDRDWNFPHHAVEDFKDIQPDSDYFPQQIFPQKQ 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2028g00009 288 Gene3D - 116 184 IPR036893 GO:0003677|GO:0005634
Gabi2028g00009 288 SUPERFAMILY SBT domain 121 201 IPR036893 GO:0003677|GO:0005634
Gabi2028g00009 288 ProSiteProfiles Zinc finger SBP-type profile. 120 197 IPR004333 GO:0003677
Gabi2028g00009 288 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 204 IPR044817 GO:0003677
Gabi2028g00009 288 FunFam Squamosa promoter-binding-like protein 14 115 184 - -
Gabi2028g00009 288 Pfam SBP domain 123 196 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2028g00009 Gabi-Chr2028 261840 265122 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2028g00009 120 203 SBP-box Gene Family AT2G42200 67.857 6.93e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi2028g00009 SBP 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2028g00009 - - gmx:100780159 355.14