Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2028g00007 ATGTTGGAATACGAATGGGGGAACCCATCAACCATAATGCTCACCGGAAATGAAGACGGTGGTGCCGCCGCCGCTGCCTCCGACCAAACCCACCGTCAAATCTTCGACCACTACGCTTCCCACACCCTTTTACCTGACCACTTCCTTCATGGGCCCACAACCACCACAAACACAGCCTCAAACACCGTTGATTTCACTCACCACCACCACTACCACCAACAACAACAGCACCACCACCACTTTAGCCCACAAGCCCAACACCAAGTCCACCACACGTTCTTCGACCCACGCGCCTTCCATGGCGTGTCCTCAACCTCCTACCCTCCACCCCAACCACCACCACCACCACCACACTCCATGCTCTCTCTTGACCCGCTGCCACACGTCAACGCAGCTAGCTGTGGGAATGGGCCTGGGCCCGGACTTATTCTCGTGCCTAAGTCTGAAGAGCTCGGTAGGCCCATGGACTTCGTGGGCTCGCGAATTGGGCTCAACCTGGGAGGCCGCACGTACTTCTCTTCTTCCGAGGATGACTTTGTGAGCAGGCTCTACCGCCGGTCCAGACCGGCTGAACCGGGTTCGACCGGTTCGTCTAACTCGCCCAGGTGTCAGGCCGAGGGATGCAATGCTGATCTGTCACAGGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAATTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCAACTCAAGAAACCCACAAATCTCAACCCACTTTGGATAATATTGCAAGATCCCCACCGGATTCCGGAGCTCAGTCGTCATCTTCAGTGACGGTGGCGGTGTCGCCGCCAGATTATTTCCGGCAAAGGTCTTATCAAAGCGGAAGCCCTTCAACAACTTCAAGCTCACTGTTTTTCTCAAGCGGGTAG 1026 0.5536 MLEYEWGNPSTIMLTGNEDGGAAAAASDQTHRQIFDHYASHTLLPDHFLHGPTTTTNTASNTVDFTHHHHYHQQQQHHHHFSPQAQHQVHHTFFDPRAFHGVSSTSYPPPQPPPPPPHSMLSLDPLPHVNAASCGNGPGPGLILVPKSEELGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSTGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQETHKSQPTLDNIARSPPDSGAQSSSSVTVAVSPPDYFRQRSYQSGSPSTTSSSLFFSSG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2028g00007 341 Gene3D - 193 264 IPR036893 GO:0003677|GO:0005634
Gabi2028g00007 341 MobiDBLite consensus disorder prediction 268 341 - -
Gabi2028g00007 341 MobiDBLite consensus disorder prediction 106 122 - -
Gabi2028g00007 341 FunFam Squamosa promoter-binding-like protein 14 194 264 - -
Gabi2028g00007 341 Pfam SBP domain 203 276 IPR004333 GO:0003677
Gabi2028g00007 341 ProSiteProfiles Zinc finger SBP-type profile. 200 277 IPR004333 GO:0003677
Gabi2028g00007 341 MobiDBLite consensus disorder prediction 99 122 - -
Gabi2028g00007 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 183 334 IPR044817 GO:0003677
Gabi2028g00007 341 SUPERFAMILY SBT domain 201 281 IPR036893 GO:0003677|GO:0005634
Gabi2028g00007 341 MobiDBLite consensus disorder prediction 282 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2028g00007 Gabi-Chr2028 112054 114455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2028g00007 1 250 SBP-box Gene Family AT1G02065 45.211 7.30e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi2028g00007 SBP 5.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2028g00007 - - gmx:100778566 502.671