Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2027g00024 ATGGAACTTCACTACATTTACATTCTCTCCTCAATCCTGCTCTTATGTCTGTTTCCTCAATCACTCAACTGCCAACAAGTATACCTCAACAGCACTGTCTATGACTGCTCTGCAAACCCTTCTTCACCAAAAGGATACCTCTGCAATGGCCTTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCAAAACCTCCTTACGATAACCCTGTAAACATTGCCTACCTTCTTGGCTCTGAAGCATCTACCATAGGCTCAATCAACAAAATCTCAATAAATGACAAGATTCCTTCAAATAAATCAATCATTGTCCCCGTCTCTTGTTCATGTCCTGGAAATATCTACCAGCATAACACACCTTACACTGTCAACAAGGATGACTACTACTTCAAGTTGGTAAATGAAACTTACCAAGGCCTCACCACCTGCCAGGGATTGATGGGTCAGAATTACTATCCTTCTCTCAATATTACAATTGGTTCTCAGCTCACAGTTCCGATGCTATGTGCTTGTCCCACGGCAAACCAGACAGCAAGAGGGGTCACGTCCTTGCTGGTTTACATGGTGAATAAGGGTGACACCATTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGCTAGAGGCCAATGAGTTGCCAGTGCCATCAAGTGCAGAGAGCATCGTGAACATCTTTGACAAGACGCCTATCTTAGTTCCTCTCAGAGGCAAGAGTTGCAAAGAGGACCCAGAAAGTTTCTATTGTACATGTTCCCAGGGACTGCTTGCAGATGGAAGCTCCATGGGGCAATATTGTAATGAATCTGATGGTAAAAAATTTCCTGCCAAATTAGTTGCTTCATTAGGTGTTGGCATTGGTGCAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAGGTTATATCGATGTATACAGATAAAAGGACAAAGAATTCGTAAGGAAAAGTTGTTCAGGAAAAATGGTGGCTACTTGTTACAAGAGAAGTTTTCATCTTATGGAAATGGAGAAAAGGCAAAGCTTTTTACAGCAGAGGAACTGAAAAGAGCAACAGATAACTACAATCGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTGTATAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTCATTTTATCCCAGATCAATCACAGGAACATTGTCAAACTCTTTGGTTGTTGTCTTGAGTCAGAAGCTCCATTACTAGTCTATGAATTTATTCCCTATGGAAACCTTTCCCACCATATCCATAGGAAAGACAATGAGGCATCCCTTCCTTGGGACAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGTGCATTGGCATATATGCATTTTGCAGCTTCTCTTCCCATCTTCCATAGAGACATCAAACCAACCAACATACTCCTGGACAGTAATTACAGTGCCAAAGTGTCTGATTTTGGGACATCAAGATCAGTTCCACAAGATAAGACTCACTTAACCACAGCTGTAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTCCAGTCCAGCCAATTTACAGATAAAAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACCGGGAGAAAGCCCATTTCGTTCTCAGATGAAGATGAGGGTCAGCATCTGGTTGCAGAGTTCATTTCTTTGATGAAGAAGGAGAACCAACTTTCTGAGATTTTAGATGCTAGAGTGCTTAAGGAAGCTAGGAAAGATGATATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCAGCAGAATTAGAAGCTTTGAGAAAGATACAAAGTTCCTTACAGATTAACCATGATCATGAGTCAACAAATGATGGACCATTGCTTAAGCACGCTACTAGTGACACAGTCCAAGAATCTAGAGAGGAAAGCATTTCACTCTTCTTGGAACCAGAGTCCACATCCTTCTAA 2037 0.4134 MELHYIYILSSILLLCLFPQSLNCQQVYLNSTVYDCSANPSSPKGYLCNGLQKSCTSFLVFRSKPPYDNPVNIAYLLGSEASTIGSINKISINDKIPSNKSIIVPVSCSCPGNIYQHNTPYTVNKDDYYFKLVNETYQGLTTCQGLMGQNYYPSLNITIGSQLTVPMLCACPTANQTARGVTSLLVYMVNKGDTIKSIGEAYGVDEQSMLEANELPVPSSAESIVNIFDKTPILVPLRGKSCKEDPESFYCTCSQGLLADGSSMGQYCNESDGKKFPAKLVASLGVGIGAGFLCLFLLGYRLYRCIQIKGQRIRKEKLFRKNGGYLLQEKFSSYGNGEKAKLFTAEELKRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEIERNQIETFVNEVVILSQINHRNIVKLFGCCLESEAPLLVYEFIPYGNLSHHIHRKDNEASLPWDSRLRIACEVAGALAYMHFAASLPIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPISFSDEDEGQHLVAEFISLMKKENQLSEILDARVLKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKIQSSLQINHDHESTNDGPLLKHATSDTVQESREESISLFLEPESTSF 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2027g00024 678 CDD STKc_IRAK 361 629 - -
Gabi2027g00024 678 SMART serkin_6 355 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2027g00024 678 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Gabi2027g00024 678 Pfam Protein kinase domain 355 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2027g00024 678 Coils Coil 619 639 - -
Gabi2027g00024 678 Gene3D Transferase(Phosphotransferase) domain 1 431 649 - -
Gabi2027g00024 678 SUPERFAMILY Protein kinase-like (PK-like) 339 626 IPR011009 -
Gabi2027g00024 678 ProSiteProfiles Protein kinase domain profile. 355 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2027g00024 678 CDD LysM 186 219 IPR018392 -
Gabi2027g00024 678 Pfam LysM domain 187 218 IPR018392 -
Gabi2027g00024 678 FunFam Wall-associated receptor kinase 2 326 430 - -
Gabi2027g00024 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gabi2027g00024 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 99 637 IPR045274 GO:0007166
Gabi2027g00024 678 FunFam Wall-associated receptor kinase 2 431 648 - -
Gabi2027g00024 678 Gene3D Phosphorylase Kinase; domain 1 328 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2027g00024 Gabi-Chr2027 235338 237811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2027g00024 285 630 Receptor kinase-like Gene Family AT1G16130 57.471 2.90e-135 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi2027g00024 Pkinase 7.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2027g00024 - - gmx:100795455 1065.83