Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2027g00023 ATGGAGCTTCACTACCTCTACATTTTCTCCACAATCCTGCTCCTGTGTCTGTTTCCTCAATCACTCAATTGTCAACAAGTATACCTCAATGACACTGTCTATGATTGCTCTAACAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCCCTCAAGATTCATGCACTTCCTTCTTAGTTTTCATGTCAAAACCTCCCTATGATAACACTGTAAGCATTGCCTACCTCCTTGGCTCTGAAGCATCTACCATAGCTTCAATCAACAACATCTCAAGAAATGACAAGATTCCTTCAAATAAATCAGTCATTGTCCCAGTCTCTTGTTCATGTCCTGGGAATATCTACCAGCATAACACACCTTACACTGTCAGCAAGAATGACACCTACTTTGAGTTGGTAAAAGAGACTTACCAAGGCCTCACCACCTGCCAGGGATTGATGGGTCAGAATTACTATCCCTCTATCAAAATTCCAGTTGGTGCTGAGATCAAAGTTCCAATGCTATGTGCTTGTCCTACAGCAGACCAGAAGGCAAAAGGGGTCGCCACATTGCTGGTTCACATGGTGAACAATGGTGATACAGTTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGCTAGAGGTCAATGAGTTGAAAGTGGCACCTAGTGCAAACAGCAGCATCATCCTCCATGCCTTGACACCTATATTAGTTCCTCTGGGAGGTAAGAGTTGCAAAGAGAACCCGGATATATTCTATTGTAAATGTTACCAGTCACTACTTGCAAATGGAAGCTCCAAGGGGGCCTTCTGTGATGAATCTGATGGCAAAAAATTCCCTGCCAAATTGGTTTCTATAATAGGTATTGGCATTGGTGCAGGCTTTCTGTGTTTGTTTCTTTTCGGTTACAGGTTGTATCAATACATACAGGAAAAGAGAGGAAGTATTTGTAAGGAAAAGCTGTTCAGGAAAAACGGTGGCTACTTGTTACAAGAGAAGTTCTCATCTCATGGAAATGGAGAAAATGTACAGATTTTTTCAGCTGAGGAGCTGCAAAGAGCAACAGATAACTATAACAGTAGTAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTGTATAAAGGAATGTTACCAGATGGAACCATTGTCGCAGTTAAGAAGTCAAAAGAGATTGAAAGGAACCAGATAGAGACTTTTGTTAATGAAGTGGTAATTTTATCCCAGATCAATCACAGGAACATTGTCAAACTCTTTGGTTGTTGTCTTGAGTCAGAAGCTCCTTTACTAGTCTATGAATTCATTCCCAATGGAACCCTTTCCGACCATATCCATAGGAAAGACCACGAGGCTTCCCTTCCTTGGGAAAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGTGCATTAGCATATATGCATTTTGCAGCTTGTGTTCCCATCTTGCACAGAGACATCAAACCCACCAACATATTACTGGACAACAACTACAGTGCCAAAGTGTCTGATTTTGGGACATCAAGATCAGTTCCACAAGATAAGACTCACTTAACCACAGCTATAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTCCAGTCCAGTCACTTTACAGATAAAAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACCGGGAGAAAGCCCAATTCATTTTCAAATGAAGATGAGGGTCAGAATCTGGTTGCAGAGTTCATTTCTTTGATGAAGGAGAACCAACTTTCTCAAATTTTAGATGCAAGGGTGCTTAAGGAAGCTAGGAAAGAAGACATTCTTGCCATTGCAAATCTTGCACTGAGTTGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGCAAGAGATTTCAGAGGAATTAGAAGCTTTGAGAAAGGTACAAAGTTCCTTACAGGTCAACCATGATCATGAGTCAACAAATGATGTACCATGTCTTAACCACGCTACTAGTGACACAGTCCAAGAATCTAGAGAGCAAAGCACTTCACTATTCTCACTGCTAGAGTCCACATCCTTTTAA 2034 0.4149 MELHYLYIFSTILLLCLFPQSLNCQQVYLNDTVYDCSNNPSAPKGYLCNGPQDSCTSFLVFMSKPPYDNTVSIAYLLGSEASTIASINNISRNDKIPSNKSVIVPVSCSCPGNIYQHNTPYTVSKNDTYFELVKETYQGLTTCQGLMGQNYYPSIKIPVGAEIKVPMLCACPTADQKAKGVATLLVHMVNNGDTVKSIGEAYGVDEQSMLEVNELKVAPSANSSIILHALTPILVPLGGKSCKENPDIFYCKCYQSLLANGSSKGAFCDESDGKKFPAKLVSIIGIGIGAGFLCLFLFGYRLYQYIQEKRGSICKEKLFRKNGGYLLQEKFSSHGNGENVQIFSAEELQRATDNYNSSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEIERNQIETFVNEVVILSQINHRNIVKLFGCCLESEAPLLVYEFIPNGTLSDHIHRKDHEASLPWESRLRIACEVAGALAYMHFAACVPILHRDIKPTNILLDNNYSAKVSDFGTSRSVPQDKTHLTTAIGGTFGYIDPEYFQSSHFTDKSDVYSFGVVLVELITGRKPNSFSNEDEGQNLVAEFISLMKENQLSQILDARVLKEARKEDILAIANLALSCLRLNGKKRPTMQEISEELEALRKVQSSLQVNHDHESTNDVPCLNHATSDTVQESREQSTSLFSLLESTSF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2027g00023 677 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 75 636 IPR045274 GO:0007166
Gabi2027g00023 677 SMART serkin_6 355 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2027g00023 677 SUPERFAMILY Protein kinase-like (PK-like) 338 625 IPR011009 -
Gabi2027g00023 677 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Gabi2027g00023 677 MobiDBLite consensus disorder prediction 637 662 - -
Gabi2027g00023 677 Pfam Protein kinase domain 355 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2027g00023 677 Gene3D Transferase(Phosphotransferase) domain 1 431 651 - -
Gabi2027g00023 677 ProSiteProfiles Protein kinase domain profile. 355 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2027g00023 677 Pfam LysM domain 187 216 IPR018392 -
Gabi2027g00023 677 CDD STKc_IRAK 361 628 - -
Gabi2027g00023 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gabi2027g00023 677 FunFam Wall-associated receptor kinase 2 431 647 - -
Gabi2027g00023 677 FunFam Wall-associated receptor kinase 2 326 430 - -
Gabi2027g00023 677 Coils Coil 618 638 - -
Gabi2027g00023 677 Gene3D Phosphorylase Kinase; domain 1 327 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2027g00023 Gabi-Chr2027 228268 230689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2027g00023 275 629 Receptor kinase-like Gene Family AT1G16130 56.704 1.54e-136 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi2027g00023 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2027g00023 - - gmx:100795455 1055.82