Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2027g00021 ATGTCCTCTTCCTCCGTTTCCAAAACCTACTTCACCAACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTTGGCTTCCTCGTTCTTCTCTCCACCCTCATCCTCATCTCCTACCTCTGCTGCAAACGCAACCGCAACTCAAACCCCAACAACAACGTTTCCAACTCTGACGGCATCGTTCTGCCACGTGTCATCTTCGTGGCCGAAGACGATGAAGAACAGGGTGGCGCGGTGGGTTTGGACCAGAACGTCATCAACTCCTATCCTAGGTTCCAGTTCAACAGGGATGCAACCAGTGGTGGAGGACACAACACCACGTGTTCCATATGTCTCTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGTCGCCATTACTTTCACCTTTTTTGCTTAGATTCATGGTTGAAGCTTAAAGGGTCTTGCCCTGTTTGTCGGAACTCGCCGCTCCCAACGCCGCTTTCTACGCCGCTTCAAGAGGTGGTGCCGCTTTCTCAGTATGCAGCTGATAGGAGGCGAATTAGGTGA 537 0.5196 MSSSSVSKTYFTNLGLGYSIAIALGFLVLLSTLILISYLCCKRNRNSNPNNNVSNSDGIVLPRVIFVAEDDEEQGGAVGLDQNVINSYPRFQFNRDATSGGGHNTTCSICLCEYKDSEMLRMMPECRHYFHLFCLDSWLKLKGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRIR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2027g00021 178 Pfam Ring finger domain 106 149 IPR001841 -
Gabi2027g00021 178 PANTHER RING-H2 FINGER PROTEIN ATL67 5 176 IPR044289 GO:0016567|GO:0016740
Gabi2027g00021 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Gabi2027g00021 178 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Gabi2027g00021 178 SMART ring_2 107 148 IPR001841 -
Gabi2027g00021 178 SUPERFAMILY RING/U-box 106 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2027g00021 Gabi-Chr2027 199119 200395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2027g00021 12 168 C3H Transcription Factor Family AT5G07040 42.675 2.24e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2027g00021 - - qsa:O6P43_027304 254.603