Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2024g00001 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATATAAATGCTCAACAATTTCTTGAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCATAGACTCAGCTGGTTCCTACAAGAGTAGGGTGGCGGGTTTTGCCACTGCTCCTCCTTGTGGGACATTGTCTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGACATCCATGGATATCTTTCTACACAGAACATACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGATGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTAA 1347 0.4313 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDMRINRDQDEREPDHINAQQFLERFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFIDSAGSYKSRVAGFATAPPCGTLSLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGHPWISFYTEHTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNDVSSLSSSSESCN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2024g00001 448 SMART serkin_6 204 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2024g00001 448 Gene3D Paired amphipathic helix 208 251 IPR036600 GO:0006355
Gabi2024g00001 448 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi2024g00001 448 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi2024g00001 448 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi2024g00001 448 SUPERFAMILY PAH2 domain 211 247 IPR036600 GO:0006355
Gabi2024g00001 448 MobiDBLite consensus disorder prediction 83 174 - -
Gabi2024g00001 448 ProSiteProfiles Protein kinase domain profile. 207 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2024g00001 448 Pfam Protein kinase domain 272 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2024g00001 448 Gene3D Transferase(Phosphotransferase) domain 1 267 399 - -
Gabi2024g00001 448 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi2024g00001 448 MobiDBLite consensus disorder prediction 119 148 - -
Gabi2024g00001 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Gabi2024g00001 448 SUPERFAMILY Protein kinase-like (PK-like) 271 387 IPR011009 -
Gabi2024g00001 448 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi2024g00001 448 MobiDBLite consensus disorder prediction 157 174 - -
Gabi2024g00001 448 MobiDBLite consensus disorder prediction 89 109 - -
Gabi2024g00001 448 PANTHER SIN3B-RELATED 9 120 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2024g00001 Gabi-Chr2024 34 3793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2024g00001 271 384 EF-hand Containing Proteins AT4G04720 47.863 4.58e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2024g00001 Pkinase 5.3e-33 CL0016
TR Others Gabi2024g00001 Pkinase 5.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2024g00001 K11644 - gmx:100807181 360.918