Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00017 ATGGTATGCTGCAGTTGCGTGAGGTTTTTGTTTGTTCGAGCTGGTACCTTCGGCAACAGAGTGAAAATCAACGGCATCGGGAGGAGTTTTCAGGCAATTCCCAGTGTTACTTATTCGCCAATTCGTGAATTTAAGACAAACATAGGGATGATGGTTGATACGGGTTCTATGTCGAGGGCCGGACCCCTTGTTGATATGATGCCAGAGAAAGATGATGATGGCCGGTTTGCCAGTGGAGGGTGGAAAAGTGAAGGTGGAAGACTTAGCTGTGGGTATTCAAGTTTTAGGGGGAAGAGAGTGACAATGGAGGATTTTTATGATATTAAAACATTGAAGATAGGTGGTCAATCAATATGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCAGAGTATTTGAAGGAACATCTCTTTGACAATCTCATTAAACATCCGAAGTTTTTGACAGATGCCAAATTGGCTATAAGTGAAACATATCAACAGACTGATGCTGATTTTCTGGATTCCGAAAAGGACAACTTCCGGGATGATGGCTCTACAGCTTCTACAGCGGTCTTGGTTGATAACCATCTTTATGTAGCTAATGTTGGAGATTCCAGGACTATAATATCGAAAGCTGGTAAAGCAATTGCTCTCTCTGACGATCATAAGCCAAATAGAAGCGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTTATGTGGGCAGGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAATCGTATGTTGAAGCAGTTTGTTGTTGCGGAACCTGAGATCCAGGACCAAGAGATGGATGAACAAATTGAACTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTTGTACAGAATGACGATGCTGTTTCTCTTGCCCGCGCAGAAGAGGAGCCCGAGGCAGCTGCTCGCAAGTTAACAGAGGCCGCATTTTCTCGTGGTAGTGCAGATAACATTACATGCATTGTGGTGCGCTTTCATCATGACAAACCAGACCCCGCTAATCCTGACAAAGCTGAATCAGCTACTGATCAGCATGAGCAGACAACGTGA 1080 0.4481 MVCCSCVRFLFVRAGTFGNRVKINGIGRSFQAIPSVTYSPIREFKTNIGMMVDTGSMSRAGPLVDMMPEKDDDGRFASGGWKSEGGRLSCGYSSFRGKRVTMEDFYDIKTLKIGGQSICLFGIFDGHGGSRAAEYLKEHLFDNLIKHPKFLTDAKLAISETYQQTDADFLDSEKDNFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKAIALSDDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQEMDEQIELLILASDGLWDVVQNDDAVSLARAEEEPEAAARKLTEAAFSRGSADNITCIVVRFHHDKPDPANPDKAESATDQHEQTT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00017 359 CDD PP2Cc 89 335 IPR001932 -
Gabi2022g00017 359 Gene3D - 81 359 IPR036457 -
Gabi2022g00017 359 SUPERFAMILY PP2C-like 84 336 IPR036457 -
Gabi2022g00017 359 PANTHER PROTEIN PHOSPHATASE 73 335 IPR015655 GO:0004722|GO:0006470
Gabi2022g00017 359 Pfam Protein phosphatase 2C 91 328 IPR001932 -
Gabi2022g00017 359 SMART PP2C_4 79 333 IPR001932 -
Gabi2022g00017 359 FunFam Probable protein phosphatase 2C 76 81 341 - -
Gabi2022g00017 359 MobiDBLite consensus disorder prediction 337 359 - -
Gabi2022g00017 359 SMART PP2C_SIG_2 87 335 IPR001932 -
Gabi2022g00017 359 ProSiteProfiles PPM-type phosphatase domain profile. 89 335 IPR001932 -
Gabi2022g00017 359 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00017 Gabi-Chr2022 124081 133391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00017 1 339 PP2C-type Phosphatase Gene Family AT5G53140 70.739 1.33e-177 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00017 K17506 - gmx:100813138 631.328