Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00010 ATGTATCTGGGATATAGATGGCGAAGGAGGCATTTATCTGCGTATGACTCAGTTGAAGAGTTCCTTAAAAACAACAACAATCTCATGCCAATAAGATACTCCTACTCAGACCTCAAAAAGATGACTAAAGGGTTTAAGGATAAACTTGGTGAGGGTGGTTATGGCTCTGTTTACAAAGGAAAACTTCGAAATGGACGTCTAGTTGCAGTCAAGATGCTAGGTGGCAGGTCCAAAACTAATGGACAAGAATTCATCAATGAAGTTGCTACCATTGGAACAATCCACCATGTTAACGTTGTGCACCTTTTTGGCTTCTGTGTTGAGAAATCAAAAAGAGCTCTTGTGTATGAGTTCATGCCTAATGGTTCCCTTGACAAGCATATTTTCTCTAGAGAAGGAAAGATCCCTTTGAGTTGGGAGAAAACTTTTGAGATTGCACTTGGTGTGGCTCGTGGTATTGAATATCTTCATCGTGGGTGTGACATGAGGATTTTGCATTTTGACATAAAGCCTCATAATATTCTTCTTGATGTGAACTTCTCTCCAAAGGTTTCAGATTTTGGGCTTGCAAAGTTGTATCCAACTGATTACAGCATTGTGTCCCTAACTGCTGCAAGAGGAACCATGGGTTACATGGCACCAGAGATGTTCTATAAGAACATTGGAGGCATTTCGTACAAAGCAGATGTTTATAGCTTTGGAATGTTGTTAATGGAAATGGCAAGTAGGAGAAAGAATGTGAATGAATTTGTTGACAATCCAAGCCAAGTTTATTTCCCTTCTTGGGTTTATGACCAATTCAGTGAAGGGAAGGAAATAGAAATAGAGAATAGTACTACCGAGGAGGATGAGAAAATATTGAAGAAGATGATAATTGTTGCATTGTGGTGCATACAAATGAAACCTAGTGATCGACCTTCAATGAGCAAAGTGGTTGAGTTGCTTGAAGGAGATGTTGAGTCCTTAGAAATGCCTCCAAAACCATTTCAAACTCCAAAAGGAATGCCAGTAGAAGGTATGGGACAATTCAGAAATCTACCTTGGTTGCCACACGGGGATTCTACTAATTCATTAACCTTTGTTCTGAATCGACATTAA 1098 0.3944 MYLGYRWRRRHLSAYDSVEEFLKNNNNLMPIRYSYSDLKKMTKGFKDKLGEGGYGSVYKGKLRNGRLVAVKMLGGRSKTNGQEFINEVATIGTIHHVNVVHLFGFCVEKSKRALVYEFMPNGSLDKHIFSREGKIPLSWEKTFEIALGVARGIEYLHRGCDMRILHFDIKPHNILLDVNFSPKVSDFGLAKLYPTDYSIVSLTAARGTMGYMAPEMFYKNIGGISYKADVYSFGMLLMEMASRRKNVNEFVDNPSQVYFPSWVYDQFSEGKEIEIENSTTEEDEKILKKMIIVALWCIQMKPSDRPSMSKVVELLEGDVESLEMPPKPFQTPKGMPVEGMGQFRNLPWLPHGDSTNSLTFVLNRH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00010 365 SUPERFAMILY Protein kinase-like (PK-like) 25 315 IPR011009 -
Gabi2022g00010 365 FunFam serine/threonine-protein kinase PBS1-like 13 118 - -
Gabi2022g00010 365 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 331 IPR045874 GO:0004672
Gabi2022g00010 365 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Gabi2022g00010 365 ProSiteProfiles Protein kinase domain profile. 43 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00010 365 Gene3D Transferase(Phosphotransferase) domain 1 119 329 - -
Gabi2022g00010 365 CDD STKc_IRAK 49 317 - -
Gabi2022g00010 365 SMART serkin_6 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00010 365 Gene3D Phosphorylase Kinase; domain 1 17 118 - -
Gabi2022g00010 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Gabi2022g00010 365 Pfam Protein kinase domain 46 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00010 365 FunFam PR5-like receptor kinase 119 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00010 Gabi-Chr2022 84830 85951 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00010 32 329 Receptor kinase-like Gene Family AT5G38280 55.629 2.23e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2022g00010 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00010 - - cam:101507916 652.899