Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00008 ATGTGGGGCAATTACTGTAGACTAGTTTGGCCATTCTTTTGCTTCCTTTTGGCTGTAAACTGTTGCACTAAGCTTGCTTCAGCTCAGAATTTATGCAGTGAAACAAGGTGCGGTCCTAATGCTCCTGTTATTCAGCCACCTTTCCGACTTAAAGACACACAACCACAAAAGTGTGGTCTAATTGGGTTTGATCTTTCATGCAACCAGAGCAACCAAACCTTTCTAGAATTGCCTCTTTCAGTAAAACTTCTTGTGAACACAATTAATTACACTTCCCAGAAGATTAATGTCACTGACCCGGATGGGTGCCTTCCAAGACTTTTGTCAAATCTCAATATATCTGCCTCTCCTTTCCACTACCTTGAAAATTTAAATGCTAACTACACCTTATTCAATTGTTCATCCATGAACACTGATTTACTATCTTATGCTTCTAGTTCTATCCCATGCCTTTCGGCTCCTGGATACCAAGTTTATGCCTTGGACTCTACACTTCGCATCAAGGATGTTACCTTGTCGTATTGTACTAAGTTGTATGACATATCATCATCGGTTCCAAATTATGTTTTTGACCAGACGGATGATCTTATTTTAAGCTGGGATAACTCAAGATATGTCTATATGACAGAAACTGAAGGTTCAGGGATATCAGTGATATCAGTGAAGCTTCTAGCACCAGCACTATCAATTGTTCTGATTGCGGTAGTGGTCATTGTGTTATATCATGTGCACCGCACAAGGCAAAAAGAAAAAGAATATCACACAAGAATTGAGAAATTCTTGGAGGATTATAGAGCACTTAAACCCACGAGGTATTCCCATGCAGATGTGAAGAGGATAACAAACAATTTCAAGACTGAATTGGGGCAGGGAGCATATGGAACTGTGTATAAAGGCATACTATCTGGTGAGATTTCAGTTGCTGTTAAGCTTCTCAAAAGTTCCACAGGGAATGGACCAGAGTTCATCAATGAAGTGGGAACAATGGGTCAAATTCACCATGTCAACGTGGTTCGCTTAGTTGGTTTCTGTGCAGATGGACATACAAGAGCTCTAGTTTATGAATATTTGCCAAATGGCTCATTACAGAAGTTCATATCTACCACAGACTTTAGAAACCATTGCCTTAGCTGGAAAAAGCTGCAAGAAATTGCTCTTGGAATAGCCAAAGGGATTGAGTATCTTCACCAAGGATGTGATCAGAGGATCCTACACTTTGATATCAAACCCCACAACATCTTGCTTGACCAGCACTTCACTCCCAAGATATCTGATTTTGGTTTGGCTAAGTTATGTTCCAAGGATCAAAGTGCAGTTTCCATGACTGCAGCAAGGGGAACTATAGGCTATATAGCACCTGAAGTTTTCTCTAGGAACTTTGGGAATGTATCATATAAATCTGATGTCTATAGTTTTGGAATGTTATTACTTGAGATGGTTGGAGGAAAACAGAATGACGAAGTTATGGAAAACGAAACTGGTCTAGGCTACTTCCCAGAATGGATTTACAATCTGTTAGAGCAAGGAGATGACCTAAGAGAGCATATTGAGGAAGAGAAATATGCTAAAATAGCTAAGAAGCTTGCAATTGTGGGACTCTGGTGCATCCAGTGGCACCCAGTTGATCGTCCTTCTATGCAATTTGTGGTTCATATGTTGGAAGGAGATGGAGACAATTTAAGTATGCCACCAAATCCATTTGCTTCTGCAGATCCAATTATAATGAATATGAGTATGCTTGGAAGGCAGCTTCACAAGGACTAA 1764 0.4008 MWGNYCRLVWPFFCFLLAVNCCTKLASAQNLCSETRCGPNAPVIQPPFRLKDTQPQKCGLIGFDLSCNQSNQTFLELPLSVKLLVNTINYTSQKINVTDPDGCLPRLLSNLNISASPFHYLENLNANYTLFNCSSMNTDLLSYASSSIPCLSAPGYQVYALDSTLRIKDVTLSYCTKLYDISSSVPNYVFDQTDDLILSWDNSRYVYMTETEGSGISVISVKLLAPALSIVLIAVVVIVLYHVHRTRQKEKEYHTRIEKFLEDYRALKPTRYSHADVKRITNNFKTELGQGAYGTVYKGILSGEISVAVKLLKSSTGNGPEFINEVGTMGQIHHVNVVRLVGFCADGHTRALVYEYLPNGSLQKFISTTDFRNHCLSWKKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDQHFTPKISDFGLAKLCSKDQSAVSMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGKQNDEVMENETGLGYFPEWIYNLLEQGDDLREHIEEEKYAKIAKKLAIVGLWCIQWHPVDRPSMQFVVHMLEGDGDNLSMPPNPFASADPIIMNMSMLGRQLHKD 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00008 587 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Gabi2022g00008 587 FunFam PR5-like receptor kinase 357 564 - -
Gabi2022g00008 587 Pfam Protein tyrosine and serine/threonine kinase 284 553 IPR001245 GO:0004672|GO:0006468
Gabi2022g00008 587 Gene3D Phosphorylase Kinase; domain 1 248 356 - -
Gabi2022g00008 587 SMART serkin_6 282 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00008 587 SUPERFAMILY Protein kinase-like (PK-like) 265 554 IPR011009 -
Gabi2022g00008 587 PANTHER RUST RESISTANCE KINASE LR10-RELATED 253 569 IPR045874 GO:0004672
Gabi2022g00008 587 Pfam Wall-associated receptor kinase galacturonan-binding 32 99 IPR025287 GO:0030247
Gabi2022g00008 587 FunFam serine/threonine-protein kinase PBS1-like 242 356 - -
Gabi2022g00008 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Gabi2022g00008 587 Gene3D Transferase(Phosphotransferase) domain 1 357 561 - -
Gabi2022g00008 587 ProSiteProfiles Protein kinase domain profile. 282 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00008 Gabi-Chr2022 74414 76428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00008 214 572 Receptor kinase-like Gene Family AT1G66910 46.575 9.67e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2022g00008 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00008 - - qsu:112017070 642.114